Nigeria H5N1 Sequence Released

Author: rose     03 11th, 2010 in enart.abczj.com     edit

  • HA and NA sequences from the human fatlity in Nigeria have been released

    ISDN230945 (http://flu.lanl.gov/search/view_record.html?accession=ISDN230945&database=fluA) A/Nigeria/6e/07 HA (4) 1660 2007 H5N1
    ISDN230944 (http://flu.lanl.gov/search/view_record.html?accession=ISDN230944&database=fluA) A/Nigeria/6e/07 NA (6) 1351 2007 H5N1


  • HA cleavage site has typical Qinghai GERRRKKR motif.


  • ISDN230945 A/Nigeria/6e/07 HA (4) 1660 2007 H5N1
    EF205154 A/chicken/Suzdalka/06/05 HA (4) 1779 2005 H5N1
    EF205156 A/goose/Suzdalka/10/05 HA (4) 1779 2005 H5N1
    EF205158 A/turkey/Suzdalka/12/05 HA (4) 1779 2005 H5N1
    CY014642 A/duck/Potsdam/1402-6/1986 HA (4) 1767 1986 H5N2
    AF082042 A/Duck/Potsdam/1402-6/86 HA (4) 1700 1986 H5N2
    CY006036 A/duck/Potsdam/2216-4/1984 HA (4) 1767 1984 H5N6
    AF082041 A/Duck/Potsdam/2216-4/84 HA (4) 1700 1984 H5N6
    M18450 A/Duck/Ireland/113/83 HA (4) 1773 1983 H5N8
    CY015089 A/turkey/Ireland/1378/1983 HA (4) 1773 1983 H5N8
    M18451 A/Turkey/Ireland/1378/83 HA (4) 1773 1983 H5N8
    CY021381 A/turkey/Italy/1980 HA (4) 1733 1980 H5N2
    AF082039 A/Duck/Hong Kong/698/79 HA (4) 1680 1979 H5N3
    AF290443 A/Duck/Ho Chi Minh/14/78 HA (4) 1659 1978 H5N3
    CY005575 A/duck/Hong Kong/342/1978 HA (4) 1767 1978 H5N2
    U20475 A/duck/Hong Kong/342/78 HA (4) 1008 1978 H5N2
    CY006028 A/goose/Hong Kong/23/1978 HA (4) 1767 1978 H5N3
    CY014615 A/duck/Hong Kong/205/1977 HA (4) 1767 1977 H5N3
    AF082038 A/Duck/Hong Kong/205/77 HA (4) 1678 1977 H5N3
    AB241615 A/duck/Miyagi/54/76 HA (4) 1634 1976 H5N3
    J02160 A/shearwater/Australia/75 HA (4) 355 1975 H5N3


  • The confirmation of H5N1 in Ghana should create the second 2007 sequence from west Africa.

    It is worth updating the Nigerian travel log

    http://www.recombinomics.com/News/02250701/H5N1_Nigeria_Recombinant.html


  • Egyptian Recombination

    EF382359 (http://flu.lanl.gov/search/view_record.html?accession=EF382359&database=fluA) A/Egypt/0636-NAMRU3/2007 HA (4) 1749 2007 H5N1
    ISDN230945 (http://flu.lanl.gov/search/view_record.html?accession=ISDN230945&database=fluA) A/Nigeria/6e/07 HA (4) 1660 2007 H5N1
    ISDN140062 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140062&database=fluA) A/chicken/Egypt/1/2006 HA (4) 1671 2006 H5N1
    EF042622 (http://flu.lanl.gov/search/view_record.html?accession=EF042622&database=fluA) A/chicken/Egypt/10845-NAMRU3/2006 HA (4) 1596 2006 H5N1
    ISDN140063 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140063&database=fluA) A/chicken/Egypt/2/2006 HA (4) 1700 2006 H5N1
    DQ862001 (http://flu.lanl.gov/search/view_record.html?accession=DQ862001&database=fluA) A/chicken/Egypt/2253-1/2006 HA (4) 1707 2006 H5N1
    ISDN140049 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140049&database=fluA) A/chicken/Egypt/3/2006 HA (4) 1698 2006 H5N1
    DQ837587 (http://flu.lanl.gov/search/view_record.html?accession=DQ837587&database=fluA) A/chicken/Egypt/5610NAMRU3-F3/2006 HA (4) 1595 2006 H5N1
    DQ837588 (http://flu.lanl.gov/search/view_record.html?accession=DQ837588&database=fluA) A/chicken/Egypt/5611NAMRU3-AN/2006 HA (4) 1613 2006 H5N1
    DQ837589 (http://flu.lanl.gov/search/view_record.html?accession=DQ837589&database=fluA) A/chicken/Egypt/5612NAMRU3-S/2006 HA (4) 1604 2006 H5N1
    DQ447199 (http://flu.lanl.gov/search/view_record.html?accession=DQ447199&database=fluA) A/chicken/Egypt/960N3-004/2006 HA (4) 1673 2006 H5N1
    DQ666146 (http://flu.lanl.gov/search/view_record.html?accession=DQ666146&database=fluA) A/Djibouti/5691NAMRU3/2006 HA (4) 1311 2006 H5N1
    DQ862002 (http://flu.lanl.gov/search/view_record.html?accession=DQ862002&database=fluA) A/duck/Egypt/2253-3/2006 HA (4) 1707 2006 H5N1
    CY016899 (http://flu.lanl.gov/search/view_record.html?accession=CY016899&database=fluA) A/duck/Egypt/2253-3/2006 HA (4) 1743 2006 H5N1
    EF061116 (http://flu.lanl.gov/search/view_record.html?accession=EF061116&database=fluA) A/Egypt/12374-NAMRU3/2006 HA (4) 1639 2006 H5N1
    EF200512 (http://flu.lanl.gov/search/view_record.html?accession=EF200512&database=fluA) A/Egypt/14724-NAMRU3/2006 HA (4) 1733 2006 H5N1
    EF200513 (http://flu.lanl.gov/search/view_record.html?accession=EF200513&database=fluA) A/Egypt/14725-NAMRU3/2006 HA (4) 1745 2006 H5N1
    EF042614 (http://flu.lanl.gov/search/view_record.html?accession=EF042614&database=fluA) A/Egypt/2763-NAMRU3/2006 HA (4) 1596 2006 H5N1
    DQ464377 (http://flu.lanl.gov/search/view_record.html?accession=DQ464377&database=fluA) A/Egypt/2782-NAMRU3/2006 HA (4) 1640 2006 H5N1
    EF042615 (http://flu.lanl.gov/search/view_record.html?accession=EF042615&database=fluA) A/Egypt/2783-NAMRU3/2006 HA (4) 1596 2006 H5N1
    EF042616 (http://flu.lanl.gov/search/view_record.html?accession=EF042616&database=fluA) A/Egypt/2786-NAMRU3/2006 HA (4) 1596 2006 H5N1
    EF042617 (http://flu.lanl.gov/search/view_record.html?accession=EF042617&database=fluA) A/Egypt/2947-NAMRU3/2006 HA (4) 1596 2006 H5N1
    EF042618 (http://flu.lanl.gov/search/view_record.html?accession=EF042618&database=fluA) A/Egypt/3105-NAMRU3/2006 HA (4) 1596 2006 H5N1
    EF042619 (http://flu.lanl.gov/search/view_record.html?accession=EF042619&database=fluA) A/Egypt/3458-NAMRU3/2006 HA (4) 1596 2006 H5N1
    EF042620 (http://flu.lanl.gov/search/view_record.html?accession=EF042620&database=fluA) A/Egypt/5494-NAMRU3/2006 HA (4) 1596 2006 H5N1
    EF042621 (http://flu.lanl.gov/search/view_record.html?accession=EF042621&database=fluA) A/Egypt/5614-NAMRU3/2006 HA (4) 1596 2006 H5N1
    ISDN140050 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140050&database=fluA) A/Egypt/902782/06 HA (4) 1692 2006 H5N1
    ISDN140051 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140051&database=fluA) A/Egypt/902786/06 HA (4) 1686 2006 H5N1
    DQ837590 (http://flu.lanl.gov/search/view_record.html?accession=DQ837590&database=fluA) A/turkey/Egypt/5613NAMRU3-T/2006 HA (4) 1603 2006 H5N1


  • Dr. Niman,
    How often do we see these polymorphisms from the Scotland discovery of 1959? I have tried to follow these "travel logs" in the past, but I don't immediately recall seeing the 1959 Scottish piece before.
    The Scotish chicken usually appears in travel logs that involve European low path.
    I haven't put up many travel logs with European low path because the database is small (but growing).

    NAMRU-3 is in the right place at the right time. You will be amazed at what comes out in the next month or two.


  • Egyptian connection (including the Hunan chickens with 3 BP deletion and the Shantou geese with V223I)

    ISDN230945 (http://flu.lanl.gov/search/view_record.html?accession=ISDN230945&database=fluA) A/Nigeria/6e/07 HA (4) 1660 2007 H5N1
    DQ993056 (http://flu.lanl.gov/search/view_record.html?accession=DQ993056&database=fluA) A/chicken/Hunan/2246/2006 HA (4) 1017 2006 H5N1
    DQ993057 (http://flu.lanl.gov/search/view_record.html?accession=DQ993057&database=fluA) A/chicken/Hunan/2292/2006 HA (4) 1074 2006 H5N1
    DQ992779 (http://flu.lanl.gov/search/view_record.html?accession=DQ992779&database=fluA) A/chicken/Shantou/1233/2006 HA (4) 1695 2006 H5N1
    DQ862002 (http://flu.lanl.gov/search/view_record.html?accession=DQ862002&database=fluA) A/duck/Egypt/2253-3/2006 HA (4) 1707 2006 H5N1
    CY016899 (http://flu.lanl.gov/search/view_record.html?accession=CY016899&database=fluA) A/duck/Egypt/2253-3/2006 HA (4) 1743 2006 H5N1
    EF042620 (http://flu.lanl.gov/search/view_record.html?accession=EF042620&database=fluA) A/Egypt/5494-NAMRU3/2006 HA (4) 1596 2006 H5N1
    DQ992781 (http://flu.lanl.gov/search/view_record.html?accession=DQ992781&database=fluA) A/goose/Shantou/2086/2006 HA (4) 1671 2006 H5N1
    DQ992923 (http://flu.lanl.gov/search/view_record.html?accession=DQ992923&database=fluA) A/goose/Shantou/2104/2006 HA (4) 771 2006 H5N1
    DQ992778 (http://flu.lanl.gov/search/view_record.html?accession=DQ992778&database=fluA) A/goose/Shantou/239/2006 HA (4) 1662 2006 H5N1
    DQ992925 (http://flu.lanl.gov/search/view_record.html?accession=DQ992925&database=fluA) A/goose/Shantou/3624/2006 HA (4) 711 2006 H5N1
    DQ993083 (http://flu.lanl.gov/search/view_record.html?accession=DQ993083&database=fluA) A/goose/Shantou/7775/2006 HA (4) 678 2006 H5N1
    DQ837590 (http://flu.lanl.gov/search/view_record.html?accession=DQ837590&database=fluA) A/turkey/Egypt/5613NAMRU3-T/2006 HA (4) 1603 2006 H5N1
    AB212649 (http://flu.lanl.gov/search/view_record.html?accession=AB212649&database=fluA) A/blow fly/Kyoto/93/2004 HA (4) 1728 2004 H5N1
    AB188824 (http://flu.lanl.gov/search/view_record.html?accession=AB188824&database=fluA) A/chicken/Kyoto/3/2004 HA (4) 1704 2004 H5N1
    AB189053 (http://flu.lanl.gov/search/view_record.html?accession=AB189053&database=fluA) A/crow/Kyoto/53/2004 HA (4) 1704 2004 H5N1
    AY995885 (http://flu.lanl.gov/search/view_record.html?accession=AY995885&database=fluA) A/mallard/Sweden/21/02 HA (4) 1710 2002 H5N2
    AY651348 (http://flu.lanl.gov/search/view_record.html?accession=AY651348&database=fluA) A/SCk/Hong Kong/YU100/2002 HA (4) 1701 2002 H5N1
    AY585375 (http://flu.lanl.gov/search/view_record.html?accession=AY585375&database=fluA) A/duck/Guangxi/50/2001 HA (4) 1708 2001 H5N1
    AF082039 (http://flu.lanl.gov/search/view_record.html?accession=AF082039&database=fluA) A/Duck/Hong Kong/698/79 HA (4) 1680 1979 H5N3
    AF290443 (http://flu.lanl.gov/search/view_record.html?accession=AF290443&database=fluA) A/Duck/Ho Chi Minh/14/78 HA (4) 1659 1978 H5N3
    CY006028 (http://flu.lanl.gov/search/view_record.html?accession=CY006028&database=fluA) A/goose/Hong Kong/23/1978 HA (4) 1767 1978 H5N3
    AB241615 (http://flu.lanl.gov/search/view_record.html?accession=AB241615&database=fluA) A/duck/Miyagi/54/76 HA (4) 1634 1976 H5N3
    AY500365 (http://flu.lanl.gov/search/view_record.html?accession=AY500365&database=fluA) A/turkey/England/N28/73 HA (4) 1720 1973 H5N2
    CY015081 (http://flu.lanl.gov/search/view_record.html?accession=CY015081&database=fluA) A/chicken/Scotland/1959 HA (4) 1767 1959 H5N1
    X07869 (http://flu.lanl.gov/search/view_record.html?accession=X07869&database=fluA) A/chicken/Scotland/59 HA (4) 1768 1959 H5N1
    X07826 (http://flu.lanl.gov/search/view_record.html?accession=X07826&database=fluA) A/Chicken/Scotland/59 HA (4) 1768 1959 H5N1


  • More mix and match with Bavaria / Swtzerland

    ISDN230945 (http://flu.lanl.gov/search/view_record.html?accession=ISDN230945&database=fluA) A/Nigeria/6e/07 HA (4) 1660 2007 H5N1
    EF165057 (http://flu.lanl.gov/search/view_record.html?accession=EF165057&database=fluA) A/buzzard/Bavaria/13/2006 HA (4) 1707 2006 H5N1
    EF165049 (http://flu.lanl.gov/search/view_record.html?accession=EF165049&database=fluA) A/buzzard/Bavaria/5/2006 HA (4) 1707 2006 H5N1
    EF165055 (http://flu.lanl.gov/search/view_record.html?accession=EF165055&database=fluA) A/common buzzard/Bavaria/11/2006 HA (4) 1707 2006 H5N1
    EF110519 (http://flu.lanl.gov/search/view_record.html?accession=EF110519&database=fluA) A/common coot/Switzerland/V544/06 HA (4) 1707 2006 H5N1
    EF165051 (http://flu.lanl.gov/search/view_record.html?accession=EF165051&database=fluA) A/common pochard/Bavaria/7/2006 HA (4) 1707 2006 H5N1
    EF165054 (http://flu.lanl.gov/search/view_record.html?accession=EF165054&database=fluA) A/eagle owl/Bavaria/10/2006 HA (4) 1707 2006 H5N1
    EF165059 (http://flu.lanl.gov/search/view_record.html?accession=EF165059&database=fluA) A/falcon/'>falcon/Bavaria/15/2006 HA (4) 1707 2006 H5N1
    EF165063 (http://flu.lanl.gov/search/view_record.html?accession=EF165063&database=fluA) A/goldeneye duck/Bavaria/19/2006 HA (4) 1707 2006 H5N1
    EF165062 (http://flu.lanl.gov/search/view_record.html?accession=EF165062&database=fluA) A/goosander/Bavaria/18/2006 HA (4) 1707 2006 H5N1
    EF165064 (http://flu.lanl.gov/search/view_record.html?accession=EF165064&database=fluA) A/goosander/Bavaria/20/2006 HA (4) 1707 2006 H5N1
    EF110518 (http://flu.lanl.gov/search/view_record.html?accession=EF110518&database=fluA) A/goosander/Switzerland/V82/06 HA (4) 1707 2006 H5N1
    DQ458992 (http://flu.lanl.gov/search/view_record.html?accession=DQ458992&database=fluA) A/mallard/Bavaria/1/2006 HA (4) 1707 2006 H5N1
    EF165058 (http://flu.lanl.gov/search/view_record.html?accession=EF165058&database=fluA) A/swan/Bavaria/14/2006 HA (4) 1707 2006 H5N1
    EF165060 (http://flu.lanl.gov/search/view_record.html?accession=EF165060&database=fluA) A/swan/Bavaria/16/2006 HA (4) 1707 2006 H5N1
    EF165061 (http://flu.lanl.gov/search/view_record.html?accession=EF165061&database=fluA) A/swan/Bavaria/17/2006 HA (4) 1707 2006 H5N1
    EF165065 (http://flu.lanl.gov/search/view_record.html?accession=EF165065&database=fluA) A/swan/Bavaria/21/2006 HA (4) 1707 2006 H5N1
    EF165050 (http://flu.lanl.gov/search/view_record.html?accession=EF165050&database=fluA) A/swan/Bavaria/6/2006 HA (4) 1707 2006 H5N1
    EF165048 (http://flu.lanl.gov/search/view_record.html?accession=EF165048&database=fluA) A/tufted duck/Bavaria/4/2006 HA (4) 1707 2006 H5N1
    EF165052 (http://flu.lanl.gov/search/view_record.html?accession=EF165052&database=fluA) A/tufted duck/Bavaria/8/2006 HA (4) 1707 2006 H5N1
    EF165053 (http://flu.lanl.gov/search/view_record.html?accession=EF165053&database=fluA) A/tufted duck/Bavaria/9/2006 HA (4) 1707 2006 H5N1


  • CY019352 A/Indonesia/CDC1031/2007 HA (4) 1659 2007 H5N1
    CY019376 A/Indonesia/CDC1031RE2/2007 HA (4) 1707 2007 H5N1
    CY019360 A/Indonesia/CDC1031T/2007 HA (4) 1659 2007 H5N1
    CY019368 A/Indonesia/CDC1031T2/2007 HA (4) 1659 2007 H5N1
    CY019384 A/Indonesia/CDC1032/2007 HA (4) 1659 2007 H5N1
    CY019392 A/Indonesia/CDC1032N/2007 HA (4) 1659 2007 H5N1
    CY019400 A/Indonesia/CDC1032T/2007 HA (4) 1659 2007 H5N1
    CY019408 A/Indonesia/CDC1046/2007 HA (4) 1707 2007 H5N1
    CY019416 A/Indonesia/CDC1046T/2007 HA (4) 1707 2007 H5N1
    CY019424 A/Indonesia/CDC1047/2007 HA (4) 1707 2007 H5N1
    CY019432 A/Indonesia/CDC1047S/2007 HA (4) 1707 2007 H5N1
    ISDN230945 A/Nigeria/6e/07 HA (4) 1660 2007 H5N1
    EF165057 A/buzzard/Bavaria/13/2006 HA (4) 1707 2006 H5N1
    EF165049 A/buzzard/Bavaria/5/2006 HA (4) 1707 2006 H5N1
    ISDN207242 A/Chicken/Bandar Lampung/BBPVIII/2006 HA (4) 1729 2006 H5N1
    ISDN230156 A/Chicken/Gunung Kidul/BBVW/2006 HA (4) 1696 2006 H5N1
    ISDN207246 A/Chicken/Karo/BBPVII/2006 HA (4) 1703 2006 H5N1
    ISDN207245 A/Chicken/Padang/BBPVII/2006 HA (4) 1708 2006 H5N1
    ISDN230170 A/Chicken/Papua/TA5/2006 HA (4) 1735 2006 H5N1
    ISDN230169 A/Chicken/Papua/TB1/2006 HA (4) 1731 2006 H5N1
    ISDN230168 A/Chicken/Papua/TB15/2006 HA (4) 1721 2006 H5N1
    ISDN207244 A/Chicken/Pulau Rampang/BBPVII/2006 HA (4) 1738 2006 H5N1
    ISDN207243 A/Chicken/Way Kanan/BBPVIII/2006 HA (4) 1725 2006 H5N1
    ISDN230165 A/Chicken/West Java/GARUT-MAY/2006 HA (4) 1733 2006 H5N1
    ISDN230175 A/Chicken/West Java/HAMD/2006 HA (4) 1737 2006 H5N1
    ISDN230167 A/Chicken/West Java/TASIK1/2006 HA (4) 1729 2006 H5N1
    ISDN230166 A/Chicken/West Java/TASIK2/2006 HA (4) 1728 2006 H5N1
    ISDN230162 A/Chicken/West Java/TASIKSOB/2006 HA (4) 1735 2006 H5N1
    ISDN230163 A/Chicken/West Java/TASIKSOL/2006 HA (4) 1715 2006 H5N1
    EF165055 A/common buzzard/Bavaria/11/2006 HA (4) 1707 2006 H5N1
    EF110519 A/common coot/Switzerland/V544/06 HA (4) 1707 2006 H5N1
    EF165051 A/common pochard/Bavaria/7/2006 HA (4) 1707 2006 H5N1
    AM403466 A/duck/Germany/R592/06 HA (4) 1707 2006 H5N1
    AM403467 A/duck/Germany/R603/06 HA (4) 1707 2006 H5N1
    DQ993022 A/duck/Guangxi/2143/2006 HA (4) 1695 2006 H5N1
    ISDN207241 A/Duck/Indramayu/BBPW109/2006 HA (4) 1729 2006 H5N1
    DQ992813 A/duck/Yunnan/1126/2006 HA (4) 1662 2006 H5N1
    EF165054 A/eagle owl/Bavaria/10/2006 HA (4) 1707 2006 H5N1
    AM403473 A/eagle owl/Germany/R1166/06 HA (4) 1707 2006 H5N1
    EF061116 A/Egypt/12374-NAMRU3/2006 HA (4) 1639 2006 H5N1
    EF165059 A/falcon/'>falcon/Bavaria/15/2006 HA (4) 1707 2006 H5N1
    AM408211 A/falcon/'>falcon/Germany/R899/06 HA (4) 1654 2006 H5N1
    CY014208 A/feline/Indonesia/CDC1/2006 HA (4) 1659 2006 H5N1
    ISDN136817 A/Feline/Indonesia/CDC1/2006 HA (4) 1659 2006 H5N1
    EF165063 A/goldeneye duck/Bavaria/19/2006 HA (4) 1707 2006 H5N1
    EF165062 A/goosander/Bavaria/18/2006 HA (4) 1707 2006 H5N1
    EF165064 A/goosander/Bavaria/20/2006 HA (4) 1707 2006 H5N1
    EF110518 A/goosander/Switzerland/V82/06 HA (4) 1707 2006 H5N1
    DQ993068 A/goose/Yunnan/2788/2006 HA (4) 1059 2006 H5N1
    DQ993108 A/goose/Yunnan/2969/2006 HA (4) 1083 2006 H5N1
    AM408212 A/great crested grebe/Germany/R1226/06 HA (4) 1654 2006 H5N1
    AM408215 A/gull/Germany/R882/06 HA (4) 1707 2006 H5N1
    ISDN133316 A/Indonesia/283H/2006 HA (4) 1752 2006 H5N1
    ISDN133323 A/Indonesia/286H/2006 HA (4) 1729 2006 H5N1
    ISDN138748 A/Indonesia/292H/2006 HA (4) 1696 2006 H5N1
    ISDN136841 A/Indonesia/298H/2006 HA (4) 1695 2006 H5N1
    ISDN136849 A/Indonesia/304H/2006 HA (4) 1707 2006 H5N1
    ISDN138764 A/Indonesia/321H/2006 HA (4) 1072 2006 H5N1
    ISDN138772 A/Indonesia/341H/2006 HA (4) 1696 2006 H5N1
    ISDN140810 A/Indonesia/534H/2006 HA (4) 1679 2006 H5N1
    ISDN140894 A/Indonesia/535H/2006 HA (4) 1703 2006 H5N1
    ISDN140895 A/Indonesia/536H/2006 HA (4) 1072 2006 H5N1
    ISDN140818 A/Indonesia/538H/2006 HA (4) 1716 2006 H5N1
    ISDN140926 A/Indonesia/542H/2006 HA (4) 1710 2006 H5N1
    ISDN187421 A/Indonesia/546bH/2006 HA (4) 1706 2006 H5N1
    ISDN140896 A/Indonesia/546H/2006 HA (4) 1707 2006 H5N1
    ISDN185493 A/Indonesia/560H/2006 HA (4) 1704 2006 H5N1
    ISDN187429 A/Indonesia/567H/2006 HA (4) 1695 2006 H5N1
    ISDN187437 A/Indonesia/569H/2006 HA (4) 1647 2006 H5N1
    ISDN187445 A/Indonesia/583H/2006 HA (4) 1651 2006 H5N1
    ISDN187453 A/Indonesia/604H/2006 HA (4) 1680 2006 H5N1
    CY014204 A/Indonesia/CDC326/2006 HA (4) 1659 2006 H5N1
    ISDN136812 A/Indonesia/CDC326/2006 HA (4) 1659 2006 H5N1
    ISDN136810 A/Indonesia/CDC326N/2006 HA (4) 1659 2006 H5N1
    CY014202 A/Indonesia/CDC326N/2006 HA (4) 1659 2006 H5N1
    CY014203 A/Indonesia/CDC326N2/2006 HA (4) 1659 2006 H5N1
    ISDN136811 A/Indonesia/CDC326N2/2006 HA (4) 1659 2006 H5N1
    ISDN136814 A/Indonesia/CDC326T/2006 HA (4) 1659 2006 H5N1
    ISDN136813 A/Indonesia/CDC326T/2006 HA (4) 1659 2006 H5N1
    CY014205 A/Indonesia/CDC326T/2006 HA (4) 1659 2006 H5N1
    CY014206 A/Indonesia/CDC329/2006 HA (4) 1659 2006 H5N1
    ISDN136815 A/Indonesia/CDC329/2006 HA (4) 1659 2006 H5N1
    ISDN136816 A/Indonesia/CDC357/2006 HA (4) 1659 2006 H5N1
    CY014207 A/Indonesia/CDC357/2006 HA (4) 1659 2006 H5N1
    ISDN136908 A/Indonesia/CDC370/2006 HA (4) 1659 2006 H5N1
    CY014209 A/Indonesia/CDC370/2006 HA (4) 1659 2006 H5N1
    ISDN136909 A/Indonesia/CDC370E/2006 HA (4) 1659 2006 H5N1
    CY014210 A/Indonesia/CDC370E/2006 HA (4) 1659 2006 H5N1
    CY014211 A/Indonesia/CDC370P/2006 HA (4) 1659 2006 H5N1
    ISDN137412 A/Indonesia/CDC370P/2006 HA (4) 1659 2006 H5N1
    ISDN137413 A/Indonesia/CDC370T/2006 HA (4) 1659 2006 H5N1
    CY014212 A/Indonesia/CDC370T/2006 HA (4) 1659 2006 H5N1
    CY014213 A/Indonesia/CDC390/2006 HA (4) 1659 2006 H5N1
    ISDN137414 A/Indonesia/CDC390/2006 HA (4) 1659 2006 H5N1
    CY014311 A/Indonesia/CDC523/2006 HA (4) 1707 2006 H5N1
    ISDN181365 A/Indonesia/CDC523/2006 HA (4) 1707 2006 H5N1
    ISDN183297 A/Indonesia/CDC523E/2006 HA (4) 1659 2006 H5N1
    CY014368 A/Indonesia/CDC523E/2006 HA (4) 1659 2006 H5N1
    ISDN183305 A/Indonesia/CDC523T/2006 HA (4) 1659 2006 H5N1
    CY014376 A/Indonesia/CDC523T/2006 HA (4) 1659 2006 H5N1
    ISDN183313 A/Indonesia/CDC582/2006 HA (4) 1659 2006 H5N1
    CY014384 A/Indonesia/CDC582/2006 HA (4) 1659 2006 H5N1
    ISDN140835 A/Indonesia/CDC594/06 HA (4) 1707 2006 H5N1
    CY014272 A/Indonesia/CDC594/2006 HA (4) 1707 2006 H5N1
    ISDN140843 A/Indonesia/CDC595/06 HA (4) 1707 2006 H5N1
    CY014280 A/Indonesia/CDC595/2006 HA (4) 1707 2006 H5N1
    ISDN140851 A/Indonesia/CDC596/06 HA (4) 1707 2006 H5N1
    CY014288 A/Indonesia/CDC596/2006 HA (4) 1707 2006 H5N1
    ISDN140859 A/Indonesia/CDC597/06 HA (4) 1707 2006 H5N1
    CY014296 A/Indonesia/CDC597/2006 HA (4) 1707 2006 H5N1
    ISDN140866 A/Indonesia/CDC599/06 HA (4) 1659 2006 H5N1
    CY014303 A/Indonesia/CDC599/2006 HA (4) 1659 2006 H5N1
    CY014477 A/Indonesia/CDC599N/2006 HA (4) 1659 2006 H5N1
    ISDN183782 A/Indonesia/CDC599N/2006 HA (4) 1659 2006 H5N1
    CY014393 A/Indonesia/CDC610/2006 HA (4) 1659 2006 H5N1
    ISDN183698 A/Indonesia/CDC610/2006 HA (4) 1659 2006 H5N1
    ISDN183706 A/Indonesia/CDC623/2006 HA (4) 1659 2006 H5N1
    CY014401 A/Indonesia/CDC623/2006 HA (4) 1659 2006 H5N1
    CY014409 A/Indonesia/CDC623E/2006 HA (4) 1659 2006 H5N1
    ISDN183714 A/Indonesia/CDC623E/2006 HA (4) 1659 2006 H5N1
    CY014417 A/Indonesia/CDC624/2006 HA (4) 1659 2006 H5N1
    ISDN183722 A/Indonesia/CDC624/2006 HA (4) 1659 2006 H5N1
    ISDN183730 A/Indonesia/CDC624E/2006 HA (4) 1659 2006 H5N1
    CY014425 A/Indonesia/CDC624E/2006 HA (4) 1659 2006 H5N1
    ISDN183738 A/Indonesia/CDC625/2006 HA (4) 1659 2006 H5N1
    CY014433 A/Indonesia/CDC625/2006 HA (4) 1659 2006 H5N1
    CY014465 A/Indonesia/CDC625L/2006 HA (4) 1707 2006 H5N1
    ISDN183770 A/Indonesia/CDC625L/2006 HA (4) 1707 2006 H5N1
    CY014441 A/Indonesia/CDC634/2006 HA (4) 1659 2006 H5N1
    ISDN183746 A/Indonesia/CDC634/2006 HA (4) 1659 2006 H5N1
    CY014449 A/Indonesia/CDC634P/2006 HA (4) 1659 2006 H5N1
    ISDN183754 A/Indonesia/CDC634P/2006 HA (4) 1659 2006 H5N1
    ISDN183762 A/Indonesia/CDC634T/2006 HA (4) 1659 2006 H5N1
    CY014457 A/Indonesia/CDC634T/2006 HA (4) 1659 2006 H5N1
    CY014518 A/Indonesia/CDC644/2006 HA (4) 1659 2006 H5N1
    ISDN207111 A/Indonesia/CDC644/2006 HA (4) 1659 2006 H5N1
    ISDN207103 A/Indonesia/CDC644T/2006 HA (4) 1659 2006 H5N1
    CY014510 A/Indonesia/CDC644T/2006 HA (4) 1659 2006 H5N1
    ISDN204133 A/Indonesia/CDC669/2006 HA (4) 1707 2006 H5N1
    CY014481 A/Indonesia/CDC669/2006 HA (4) 1707 2006 H5N1
    ISDN204141 A/Indonesia/CDC669P/2006 HA (4) 1707 2006 H5N1
    CY014489 A/Indonesia/CDC669P/2006 HA (4) 1707 2006 H5N1
    ISDN204149 A/Indonesia/CDC699/2006 HA (4) 1707 2006 H5N1
    CY014497 A/Indonesia/CDC699/2006 HA (4) 1707 2006 H5N1
    CY014529 A/Indonesia/CDC739/2006 HA (4) 1659 2006 H5N1
    CY014537 A/Indonesia/CDC742/2006 HA (4) 1659 2006 H5N1
    CY014543 A/Indonesia/CDC759/2006 HA (4) 1659 2006 H5N1
    CY017662 A/Indonesia/CDC835/2006 HA (4) 1779 2006 H5N1
    CY017670 A/Indonesia/CDC836/2006 HA (4) 1783 2006 H5N1
    CY017678 A/Indonesia/CDC836T/2006 HA (4) 1780 2006 H5N1
    CY017688 A/Indonesia/CDC887/2006 HA (4) 1780 2006 H5N1
    CY017638 A/Indonesia/CDC938/2006 HA (4) 1782 2006 H5N1
    CY017646 A/Indonesia/CDC938E/2006 HA (4) 1781 2006 H5N1
    CY017654 A/Indonesia/CDC940/2006 HA (4) 1782 2006 H5N1
    DQ458992 A/mallard/Bavaria/1/2006 HA (4) 1707 2006 H5N1
    ISDN230159 A/Muscovy Duck/Jakarta/HABWIN/2006 HA (4) 1734 2006 H5N1
    AM403465 A/pochard/Germany/R348/06 HA (4) 1707 2006 H5N1
    ISDN230171 A/Quail/Central Java/SMRG/2006 HA (4) 1729 2006 H5N1
    ISDN230164 A/Quail/Jakarta/JU1/2006 HA (4) 1696 2006 H5N1
    EF165058 A/swan/Bavaria/14/2006 HA (4) 1707 2006 H5N1
    EF165060 A/swan/Bavaria/16/2006 HA (4) 1707 2006 H5N1
    EF165061 A/swan/Bavaria/17/2006 HA (4) 1707 2006 H5N1
    EF165065 A/swan/Bavaria/21/2006 HA (4) 1707 2006 H5N1
    EF165050 A/swan/Bavaria/6/2006 HA (4) 1707 2006 H5N1
    EF165048 A/tufted duck/Bavaria/4/2006 HA (4) 1707 2006 H5N1
    EF165052 A/tufted duck/Bavaria/8/2006 HA (4) 1707 2006 H5N1
    EF165053 A/tufted duck/Bavaria/9/2006 HA (4) 1707 2006 H5N1
    AM408216 A/tufted duck/Germany/R1240/06 HA (4) 1707 2006 H5N1
    ISDN133098 A/Turkey/12/2006 HA (4) 1659 2006 H5N1
    ISDN133105 A/Turkey/15/2006 HA (4) 1659 2006 H5N1
    ISDN133364 A/Turkey/65596/06 HA (4) 1659 2006 H5N1
    ISDN208029 A/Chicken/Agam/BBPVI/2005 HA (4) 1695 2005 H5N1
    DQ320932 A/chicken/Bantul/BBVet-I/2005 HA (4) 1698 2005 H5N1
    DQ497667 A/chicken/Dairi/BPPVI/2005 HA (4) 1698 2005 H5N1
    ISDN208025 A/Chicken/Deli Derdang/BBPVI/2005 HA (4) 1735 2005 H5N1
    ISDN208042 A/Chicken/Deli Serdang/BPPV1/2005 HA (4) 1706 2005 H5N1
    DQ497668 A/chicken/Deli Serdang/BPPVI/2005 HA (4) 1698 2005 H5N1
    ISDN208032 A/Chicken/Duma/BBPV-II/2005 HA (4) 1725 2005 H5N1
    DQ320876 A/chicken/Fujian/1042/2005 HA (4) 1698 2005 H5N1
    DQ992755 A/chicken/Guiyang/3055/2005 HA (4) 1695 2005 H5N1
    DQ992888 A/chicken/Guiyang/3312/2005 HA (4) 1017 2005 H5N1
    DQ992758 A/chicken/Guiyang/3570/2005 HA (4) 1662 2005 H5N1
    DQ497651 A/chicken/Gunung Kidal/BBVW/2005 HA (4) 1698 2005 H5N1
    ISDN129601 A/Chicken/Indonesia/CDC24/2005 HA (4) 1659 2005 H5N1
    CY014193 A/chicken/Indonesia/CDC24/2005 HA (4) 1659 2005 H5N1
    CY014185 A/chicken/Indonesia/CDC25/2005 HA (4) 1659 2005 H5N1
    ISDN129590 A/Chicken/Indonesia/CDC25/2005 HA (4) 1659 2005 H5N1
    AM183670 A/chicken/Indonesia/R60/05 HA (4) 1779 2005 H5N1
    ISDN187385 A/Chicken/Indonesia/Wates1/2005 HA (4) 1714 2005 H5N1
    ISDN187389 A/Chicken/Indonesia/Wates126/2005 HA (4) 1717 2005 H5N1
    ISDN187386 A/Chicken/Indonesia/Wates130/2005 HA (4) 1704 2005 H5N1
    ISDN187387 A/Chicken/Indonesia/Wates77/2005 HA (4) 1714 2005 H5N1
    ISDN187388 A/Chicken/Indonesia/Wates80/2005 HA (4) 1711 2005 H5N1
    ISDN187390 A/Chicken/Indonesia/Wates83/2005 HA (4) 1714 2005 H5N1
    EF208916 A/chicken/Jakarta/DKI3a/2005 HA (4) 1088 2005 H5N1
    DQ497652 A/chicken/Kulon Progo/BBVW/2005 HA (4) 1446 2005 H5N1
    ISDN207239 A/Chicken/Langkat/BBPV1-576/2005 HA (4) 1737 2005 H5N1
    ISDN230157 A/Chicken/Madiun/BBVW1420/2005 HA (4) 1730 2005 H5N1
    DQ497643 A/chicken/Magetan/BBVW/2005 HA (4) 1698 2005 H5N1
    ISDN207237 A/Chicken/Medan/BBPV1-571/2005 HA (4) 1735 2005 H5N1
    ISDN207238 A/Chicken/Medan/BBPV1-576/2005 HA (4) 1735 2005 H5N1
    ISDN208028 A/Chicken/Medan/BPPV1-498/2005 HA (4) 1731 2005 H5N1
    ISDN208026 A/chicken/Medan/BPPV1-534/2005 HA (4) 1695 2005 H5N1
    ISDN208031 A/Chicken/Murao Jambi/BBPV-II/2005 HA (4) 1711 2005 H5N1
    ISDN208035 A/Chicken/Pakun Baru/BPPV-II/2005 HA (4) 1710 2005 H5N1
    ISDN208036 A/Chicken/Palembang/BPPV-III/2005 HA (4) 1704 2005 H5N1
    ISDN208027 A/Chicken/Pidie/BPPV1/2005 HA (4) 1736 2005 H5N1
    DQ497648 A/chicken/Purworejo/BBVW/2005 HA (4) 1698 2005 H5N1
    ISDN208033 A/Chicken/Rokan Hilli/BPPV-II/2005 HA (4) 1700 2005 H5N1
    ISDN208030 A/Chicken/Salam/BBPV-II/2005 HA (4) 1727 2005 H5N1
    DQ320928 A/chicken/Salatiga/BBVet-I/2005 HA (4) 1698 2005 H5N1
    ISDN208037 A/Chicken/Sembawa/BPPV-III/2005 HA (4) 1703 2005 H5N1
    DQ095626 A/Chicken/Shantou/810/05 HA (4) 1693 2005 H5N1
    ISDN208034 A/Chicken/Siak/BPPV-II/2005 HA (4) 1704 2005 H5N1
    DQ497665 A/chicken/Simalanggang/BPPVI/2005 HA (4) 1698 2005 H5N1
    ISDN207240 A/Chicken/Taput/BBPV1-576/2005 HA (4) 1740 2005 H5N1
    DQ497669 A/chicken/Tarutung/BPPVI/2005 HA (4) 1698 2005 H5N1
    DQ497666 A/chicken/Tebing Tinggi/BPPVI/2005 HA (4) 1698 2005 H5N1
    DQ320933 A/chicken/Wajo/BBVM/2005 HA (4) 1698 2005 H5N1
    EF208917 A/chicken/West Java/Smihay1/2005 HA (4) 1087 2005 H5N1
    ISDN208041 A/Duck/Bufeleng/BPPV1/2005 HA (4) 1695 2005 H5N1
    DQ320875 A/duck/Fujian/897/2005 HA (4) 1695 2005 H5N1
    DQ992714 A/duck/Guangxi/2775/2005 HA (4) 1695 2005 H5N1
    DQ320901 A/duck/Guangzhou/20/2005 HA (4) 1698 2005 H5N1
    DQ992754 A/duck/Guiyang/3009/2005 HA (4) 1596 2005 H5N1
    DQ992881 A/duck/Guiyang/3016/2005 HA (4) 1065 2005 H5N1
    DQ992756 A/duck/Guiyang/3242/2005 HA (4) 1695 2005 H5N1
    DQ992891 A/duck/Guiyang/3458/2005 HA (4) 1017 2005 H5N1
    DQ992893 A/duck/Guiyang/3475/2005 HA (4) 1059 2005 H5N1
    DQ992902 A/duck/Guiyang/3845/2005 HA (4) 1059 2005 H5N1
    DQ992905 A/duck/Guiyang/3971/2005 HA (4) 1017 2005 H5N1
    ISDN208039 A/Duck/Madiun/BBVW1358/2005 HA (4) 1705 2005 H5N1
    ISDN208038 A/Duck/Pali/BBVW1358/2005 HA (4) 1705 2005 H5N1
    DQ497659 A/duck/Parepare/BBVM/2005 HA (4) 1689 2005 H5N1
    ISDN208040 A/Duck/Tabanan/BPPV1/2005 HA (4) 1704 2005 H5N1
    DQ992810 A/duck/Yunnan/6332/2005 HA (4) 1194 2005 H5N1
    DQ992812 A/duck/Yunnan/6607/2005 HA (4) 1647 2005 H5N1
    DQ992883 A/goose/Guiyang/3120/2005 HA (4) 999 2005 H5N1
    DQ992884 A/goose/Guiyang/3144/2005 HA (4) 978 2005 H5N1
    DQ992885 A/goose/Guiyang/3163/2005 HA (4) 1065 2005 H5N1
    DQ992886 A/goose/Guiyang/3169/2005 HA (4) 966 2005 H5N1
    DQ992890 A/goose/Guiyang/3405/2005 HA (4) 984 2005 H5N1
    DQ992757 A/goose/Guiyang/3422/2005 HA (4) 1683 2005 H5N1
    DQ992894 A/goose/Guiyang/3521/2005 HA (4) 1059 2005 H5N1
    DQ992895 A/goose/Guiyang/3526/2005 HA (4) 1059 2005 H5N1
    DQ992896 A/goose/Guiyang/3610/2005 HA (4) 1059 2005 H5N1
    DQ992898 A/goose/Guiyang/3751/2005 HA (4) 1059 2005 H5N1
    DQ992899 A/goose/Guiyang/3759/2005 HA (4) 1059 2005 H5N1
    DQ992901 A/goose/Guiyang/3783/2005 HA (4) 1059 2005 H5N1
    DQ095628 A/Goose/Shantou/1621/05 HA (4) 1701 2005 H5N1
    DQ320915 A/goose/Shantou/2216/2005 HA (4) 1698 2005 H5N1
    DQ992811 A/goose/Yunnan/6368/2005 HA (4) 1647 2005 H5N1
    ISDN130373 A/Indonesia/160H/2005 HA (4) 1708 2005 H5N1
    ISDN130365 A/Indonesia/175H/2005 HA (4) 1709 2005 H5N1
    ISDN130912 A/Indonesia/195H/2005 HA (4) 1700 2005 H5N1
    ISDN132406 A/Indonesia/239H/2005 HA (4) 1647 2005 H5N1
    ISDN132414 A/Indonesia/245H/2005 HA (4) 1653 2005 H5N1
    EF541394 A/Indonesia/5/05 HA (4) 1729 2005 H5N1
    ISDN125873 A/Indonesia/5/05 HA (4) 1729 2005 H5N1
    ISDN125783 A/Indonesia/5/2005 HA (4) 1741 2005 H5N1
    ISDN128026 A/Indonesia/6/2005 HA (4) 1712 2005 H5N1
    ISDN129527 A/Indonesia/7/2005 HA (4) 1706 2005 H5N1
    CY014197 A/Indonesia/CDC184/2005 HA (4) 1659 2005 H5N1
    ISDN129921 A/Indonesia/CDC184/2005 HA (4) 1659 2005 H5N1
    CY014168 A/Indonesia/CDC194P/2005 HA (4) 1659 2005 H5N1
    ISDN129922 A/Indonesia/CDC194P/2005 HA (4) 1659 2005 H5N1
    ISDN136806 A/Indonesia/CDC287E/2005 HA (4) 1659 2005 H5N1
    CY014198 A/Indonesia/CDC287E/2005 HA (4) 1659 2005 H5N1
    CY014199 A/Indonesia/CDC287T/2005 HA (4) 1659 2005 H5N1
    ISDN136807 A/Indonesia/CDC287T/2005 HA (4) 1659 2005 H5N1
    CY014200 A/Indonesia/CDC292N/2005 HA (4) 1659 2005 H5N1
    ISDN136808 A/Indonesia/CDC292N/2005 HA (4) 1659 2005 H5N1
    ISDN136809 A/Indonesia/CDC292T/2005 HA (4) 1659 2005 H5N1
    CY014201 A/Indonesia/CDC292T/2005 HA (4) 1659 2005 H5N1
    CY014177 A/Indonesia/CDC7/2005 HA (4) 1659 2005 H5N1
    ISDN129582 A/Indonesia/CDC7/2005 HA (4) 1659 2005 H5N1
    DQ826532 A/mallard/BC/373/2005 HA (4) 1687 2005 H5N2
    DQ320916 A/migratory duck/Jiangxi/1653/2005 HA (4) 1698 2005 H5N1
    DQ320917 A/migratory duck/Jiangxi/1657/2005 HA (4) 1698 2005 H5N1
    DQ320918 A/migratory duck/Jiangxi/1701/2005 HA (4) 1698 2005 H5N1
    DQ095627 A/Quail/Shantou/911/05 HA (4) 1703 2005 H5N1
    EF208918 A/quail/West Java/Smigq1/2005 HA (4) 1071 2005 H5N1
    EF208915 A/quail/West Java/smijjg2/2005 HA (4) 1074 2005 H5N1
    ISDN208024 A/Turkey/Langkat/BBPVI/2005 HA (4) 1695 2005 H5N1
    DQ497655 A/chicken/Bangli Bali/BBPV6-1/2004 HA (4) 1698 2004 H5N1
    DQ497656 A/chicken/Bangli Bali/BPPV6-2/2004 HA (4) 1698 2004 H5N1
    ISDN48972 A/Chicken/Hu bei/14/2004 HA (4) 1779 2004 H5N1
    DQ497657 A/chicken/Jembrana/BPPV6/2004 HA (4) 1659 2004 H5N1
    DQ320931 A/chicken/Kulon Progo/BBVet-XII-1/2004 HA (4) 1688 2004 H5N1
    DQ497650 A/chicken/Kulon Progo/BBVet-XII-2/2004 HA (4) 1695 2004 H5N1
    DQ497662 A/chicken/Kupang-1-NTT/BPPV6/2004 HA (4) 1695 2004 H5N1
    DQ497660 A/chicken/Kupang-2-NTT/BPPV6/2004 HA (4) 1698 2004 H5N1
    DQ497661 A/chicken/Kupang-3-NTT/BPPV6/2004 HA (4) 1698 2004 H5N1
    AY830774 A/chicken/Macheng/2004 HA (4) 1707 2004 H5N1
    DQ497642


  • Los Alamos has been down all weekend, but should be up later today.


  • Recombination in action. Shantou and western Africa again

    ISDN230945 (http://flu.lanl.gov/search/view_record.html?accession=ISDN230945&database=fluA) A/Nigeria/6e/07 HA (4) 1660 2007 H5N1
    EF090649 (http://flu.lanl.gov/search/view_record.html?accession=EF090649&database=fluA) A/chicken/Burkina Faso/5346-11/2006 HA (4) 1207 2006 H5N1
    EF090650 (http://flu.lanl.gov/search/view_record.html?accession=EF090650&database=fluA) A/chicken/Burkina Faso/5346-14/2006 HA (4) 1176 2006 H5N1
    CY016811 (http://flu.lanl.gov/search/view_record.html?accession=CY016811&database=fluA) A/chicken/Cote d'Ivoire/1787-34/2006 HA (4) 1722 2006 H5N1
    DQ673901 (http://flu.lanl.gov/search/view_record.html?accession=DQ673901&database=fluA) A/chicken/Ivory Coast/1787/2006 HA (4) 1690 2006 H5N1
    CY016931 (http://flu.lanl.gov/search/view_record.html?accession=CY016931&database=fluA) A/chicken/Nigeria/1047-62/2006 HA (4) 1733 2006 H5N1
    CY016276 (http://flu.lanl.gov/search/view_record.html?accession=CY016276&database=fluA) A/chicken/Nigeria/641/2006 HA (4) 1732 2006 H5N1
    DQ406728 (http://flu.lanl.gov/search/view_record.html?accession=DQ406728&database=fluA) A/chicken/Nigeria/641/2006 HA (4) 1669 2006 H5N1
    CY016300 (http://flu.lanl.gov/search/view_record.html?accession=CY016300&database=fluA) A/chicken/Sudan/1784-10/2006 HA (4) 1734 2006 H5N1
    CY016292 (http://flu.lanl.gov/search/view_record.html?accession=CY016292&database=fluA) A/chicken/Sudan/1784-7/2006 HA (4) 1734 2006 H5N1
    DQ862003 (http://flu.lanl.gov/search/view_record.html?accession=DQ862003&database=fluA) A/chicken/Sudan/1784/2006 HA (4) 1690 2006 H5N1
    DQ861999 (http://flu.lanl.gov/search/view_record.html?accession=DQ861999&database=fluA) A/chicken/Sudan/2115-12/2006 HA (4) 1707 2006 H5N1
    DQ862000 (http://flu.lanl.gov/search/view_record.html?accession=DQ862000&database=fluA) A/chicken/Sudan/2115-9/2006 HA (4) 1707 2006 H5N1
    CY016803 (http://flu.lanl.gov/search/view_record.html?accession=CY016803&database=fluA) A/duck/Cote d'Ivoire/1787-18/2006 HA (4) 1734 2006 H5N1
    DQ992781 (http://flu.lanl.gov/search/view_record.html?accession=DQ992781&database=fluA) A/goose/Shantou/2086/2006 HA (4) 1671 2006 H5N1
    DQ992923 (http://flu.lanl.gov/search/view_record.html?accession=DQ992923&database=fluA) A/goose/Shantou/2104/2006 HA (4) 771 2006 H5N1
    DQ992778 (http://flu.lanl.gov/search/view_record.html?accession=DQ992778&database=fluA) A/goose/Shantou/239/2006 HA (4) 1662 2006 H5N1
    DQ992925 (http://flu.lanl.gov/search/view_record.html?accession=DQ992925&database=fluA) A/goose/Shantou/3624/2006 HA (4) 711 2006 H5N1
    DQ993083 (http://flu.lanl.gov/search/view_record.html?accession=DQ993083&database=fluA) A/goose/Shantou/7775/2006 HA (4) 678 2006 H5N1
    EF090648 (http://flu.lanl.gov/search/view_record.html?accession=EF090648&database=fluA) A/hooded vulture/Burkina Faso/5346-10/2006 HA (4) 1200 2006 H5N1
    EF090647 (http://flu.lanl.gov/search/view_record.html?accession=EF090647&database=fluA) A/partridge/Burkina Faso/5346-26/2006 HA (4) 1181 2006 H5N1
    DQ323672 (http://flu.lanl.gov/search/view_record.html?accession=DQ323672&database=fluA) A/chicken/Kurgan/3/2005 HA (4) 1754 2005 H5N1
    AB212649 (http://flu.lanl.gov/search/view_record.html?accession=AB212649&database=fluA) A/blow fly/Kyoto/93/2004 HA (4) 1728 2004 H5N1
    AB188824 (http://flu.lanl.gov/search/view_record.html?accession=AB188824&database=fluA) A/chicken/Kyoto/3/2004 HA (4) 1704 2004 H5N1
    AB188816 (http://flu.lanl.gov/search/view_record.html?accession=AB188816&database=fluA) A/chicken/Oita/8/2004 HA (4) 1704 2004 H5N1
    AB166862 (http://flu.lanl.gov/search/view_record.html?accession=AB166862&database=fluA) A/chicken/Yamaguchi/7/2004 HA (4) 1704 2004 H5N1
    ISDN49016 (http://flu.lanl.gov/search/view_record.html?accession=ISDN49016&database=fluA) A/Chicken/Yamaguchi/7/2004 HA (4) 1704 2004 H5N1
    AB189053 (http://flu.lanl.gov/search/view_record.html?accession=AB189053&database=fluA) A/crow/Kyoto/53/2004 HA (4) 1704 2004 H5N1
    AB189061 (http://flu.lanl.gov/search/view_record.html?accession=AB189061&database=fluA) A/crow/Osaka/102/2004 HA (4) 1704 2004 H5N1
    AY676035 (http://flu.lanl.gov/search/view_record.html?accession=AY676035&database=fluA) A/chicken/Korea/ES/03 HA (4) 1704 2003 H5N1
    ISDN40921 (http://flu.lanl.gov/search/view_record.html?accession=ISDN40921&database=fluA) A/Chicken/Korea/es/2003 HA (4) 1673 2003 H5N1
    AY676036 (http://flu.lanl.gov/search/view_record.html?accession=AY676036&database=fluA) A/duck/Korea/ESD1/03 HA (4) 1704 2003 H5N1
    DQ997276 (http://flu.lanl.gov/search/view_record.html?accession=DQ997276&database=fluA) A/goose/Jilin/hb/2003 HA (4) 1779 2003 H5N1


  • Nonstop from Siberia to western Africa

    ISDN230945 (http://flu.lanl.gov/search/view_record.html?accession=ISDN230945&database=fluA) A/Nigeria/6e/07 HA (4) 1660 2007 H5N1
    EF090649 (http://flu.lanl.gov/search/view_record.html?accession=EF090649&database=fluA) A/chicken/Burkina Faso/5346-11/2006 HA (4) 1207 2006 H5N1
    EF090650 (http://flu.lanl.gov/search/view_record.html?accession=EF090650&database=fluA) A/chicken/Burkina Faso/5346-14/2006 HA (4) 1176 2006 H5N1
    CY016811 (http://flu.lanl.gov/search/view_record.html?accession=CY016811&database=fluA) A/chicken/Cote d'Ivoire/1787-34/2006 HA (4) 1722 2006 H5N1
    DQ673901 (http://flu.lanl.gov/search/view_record.html?accession=DQ673901&database=fluA) A/chicken/Ivory Coast/1787/2006 HA (4) 1690 2006 H5N1
    DQ676834 (http://flu.lanl.gov/search/view_record.html?accession=DQ676834&database=fluA) A/chicken/Krasnodar/01/2006 HA (4) 1754 2006 H5N1
    ISDN138756 (http://flu.lanl.gov/search/view_record.html?accession=ISDN138756&database=fluA) A/chicken/Malaysia/935/2006 HA (4) 1721 2006 H5N1
    CY016931 (http://flu.lanl.gov/search/view_record.html?accession=CY016931&database=fluA) A/chicken/Nigeria/1047-62/2006 HA (4) 1733 2006 H5N1
    CY016276 (http://flu.lanl.gov/search/view_record.html?accession=CY016276&database=fluA) A/chicken/Nigeria/641/2006 HA (4) 1732 2006 H5N1
    DQ406728 (http://flu.lanl.gov/search/view_record.html?accession=DQ406728&database=fluA) A/chicken/Nigeria/641/2006 HA (4) 1669 2006 H5N1
    CY016300 (http://flu.lanl.gov/search/view_record.html?accession=CY016300&database=fluA) A/chicken/Sudan/1784-10/2006 HA (4) 1734 2006 H5N1
    CY016292 (http://flu.lanl.gov/search/view_record.html?accession=CY016292&database=fluA) A/chicken/Sudan/1784-7/2006 HA (4) 1734 2006 H5N1
    DQ862003 (http://flu.lanl.gov/search/view_record.html?accession=DQ862003&database=fluA) A/chicken/Sudan/1784/2006 HA (4) 1690 2006 H5N1
    DQ861999 (http://flu.lanl.gov/search/view_record.html?accession=DQ861999&database=fluA) A/chicken/Sudan/2115-12/2006 HA (4) 1707 2006 H5N1
    DQ862000 (http://flu.lanl.gov/search/view_record.html?accession=DQ862000&database=fluA) A/chicken/Sudan/2115-9/2006 HA (4) 1707 2006 H5N1
    CY016803 (http://flu.lanl.gov/search/view_record.html?accession=CY016803&database=fluA) A/duck/Cote d'Ivoire/1787-18/2006 HA (4) 1734 2006 H5N1
    EF090648 (http://flu.lanl.gov/search/view_record.html?accession=EF090648&database=fluA) A/hooded vulture/Burkina Faso/5346-10/2006 HA (4) 1200 2006 H5N1
    EF090647 (http://flu.lanl.gov/search/view_record.html?accession=EF090647&database=fluA) A/partridge/Burkina Faso/5346-26/2006 HA (4) 1181 2006 H5N1
    DQ449632 (http://flu.lanl.gov/search/view_record.html?accession=DQ449632&database=fluA) A/chicken/Kurgan/05/2005 HA (4) 1754 2005 H5N1
    DQ323672 (http://flu.lanl.gov/search/view_record.html?accession=DQ323672&database=fluA) A/chicken/Kurgan/3/2005 HA (4) 1754 2005 H5N1
    DQ095626 (http://flu.lanl.gov/search/view_record.html?accession=DQ095626&database=fluA) A/Chicken/Shantou/810/05 HA (4) 1693 2005 H5N1


  • Commentary at

    http://www.recombinomics.com/News/02250701/H5N1_Nigeria_Recombinant.html


  • Egyptian connection

    ISDN230945 (http://flu.lanl.gov/search/view_record.html?accession=ISDN230945&database=fluA) A/Nigeria/6e/07 HA (4) 1660 2007 H5N1
    DQ837587 (http://flu.lanl.gov/search/view_record.html?accession=DQ837587&database=fluA) A/chicken/Egypt/5610NAMRU3-F3/2006 HA (4) 1595 2006 H5N1
    DQ837588 (http://flu.lanl.gov/search/view_record.html?accession=DQ837588&database=fluA) A/chicken/Egypt/5611NAMRU3-AN/2006 HA (4) 1613 2006 H5N1


  • Dr. Niman,
    How often do we see these polymorphisms from the Scotland discovery of 1959? I have tried to follow these "travel logs" in the past, but I don't immediately recall seeing the 1959 Scottish piece before.


  • thank dr Niman.. you"re aware..







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