Human H5N1 Azerbaijan Sequences Released

Author: jane     03 15th, 2010 in enart.abczj.com     edit

  • Today the human H5N1 Azerbaijan sequences in WHO database were released

    ISDN140047 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140047&database=fluA) A/Azerbaijan/001-161/2006 PA (3) 2170 2006 H5N1
    ISDN140072 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140072&database=fluA) A/Azerbaijan/001-161/2006 NA (6) 1359 2006 H5N1
    ISDN140057 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140057&database=fluA) A/Azerbaijan/001-161/2006 HA (4) 1661 2006 H5N1
    ISDN140101 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140101&database=fluA) A/Azerbaijan/001-161/2006 NS (8) 806 2006 H5N1
    ISDN140084 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140084&database=fluA) A/Azerbaijan/001-161/2006 NP (5) 1422 2006 H5N1
    ISDN140091 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140091&database=fluA) A/Azerbaijan/001-161/2006 MP (7) 951 2006 H5N1
    ISDN140092 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140092&database=fluA) A/Azerbaijan/002-115/2006 MP (7) 951 2006 H5N1
    ISDN140085 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140085&database=fluA) A/Azerbaijan/002-115/2006 NP (5) 1422 2006 H5N1
    ISDN140048 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140048&database=fluA) A/Azerbaijan/002-115/2006 PA (3) 1911 2006 H5N1
    ISDN140058 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140058&database=fluA) A/Azerbaijan/002-115/2006 HA (4) 1686 2006 H5N1
    ISDN140102 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140102&database=fluA) A/Azerbaijan/002-115/2006 NS (8) 806 2006 H5N1
    ISDN140073 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140073&database=fluA) A/Azerbaijan/002-115/2006 NA (6) 1356 2006 H5N1

    ISDN140070 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140070&database=fluA) A/Azerbaijan/008-208/2006 NA (6) 1326 2006 H5N1
    ISDN140038 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140038&database=fluA) A/Azerbaijan/008-208/2006 PB1 (2) 2274 2006 H5N1
    ISDN140045 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140045&database=fluA) A/Azerbaijan/008-208/2006 PA (3) 2121 2006 H5N1
    ISDN140055 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140055&database=fluA) A/Azerbaijan/008-208/2006 HA (4) 1684 2006 H5N1
    ISDN140082 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140082&database=fluA) A/Azerbaijan/008-208/2006 NP (5) 1410 2006 H5N1
    ISDN140031 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140031&database=fluA) A/Azerbaijan/008-208/2006 PB2 (1) 2259 2006 H5N1
    ISDN140099 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140099&database=fluA) A/Azerbaijan/008-208/2006 NS (8) 806 2006 H5N1
    ISDN140100 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140100&database=fluA) A/Azerbaijan/011-162/2006 NS (8) 806 2006 H5N1
    ISDN140090 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140090&database=fluA) A/Azerbaijan/011-162/2006 MP (7) 948 2006 H5N1
    ISDN140071 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140071&database=fluA) A/Azerbaijan/011-162/2006 NA (6) 1361 2006 H5N1
    ISDN140083 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140083&database=fluA) A/Azerbaijan/011-162/2006 NP (5) 1402 2006 H5N1
    ISDN140056 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140056&database=fluA) A/Azerbaijan/011-162/2006 HA (4) 1659 2006 H5N1
    ISDN140046 (http://flu.lanl.gov/search/view_record.html?accession=ISDN140046&database=fluA) A/Azerbaijan/011-162/2006 PA (3) 2169 2006 H5N1


  • dr niman sorry to bother you ,but would it be possible to point me in the right direction so i can learn how to read these sequences from a beginners point of view please.thank you vinny.


  • ISDN140057 A/Azerbaijan/001-161/2006 HA (4) 1661 2006 H5N1
    ISDN140056 A/Azerbaijan/011-162/2006 HA (4) 1659 2006 H5N1
    AY555150 A/Thailand/1-KAN-1/2004 HA (4) 1739 2004 H5N1


  • ISDN140037 A/Azerbaijan/006-207/2006 PB1 (2) 2277 2006 H5N1
    ISDN140038 A/Azerbaijan/008-208/2006 PB1 (2) 2274 2006 H5N1
    ISDN133330 A/Indonesia/283H/2006 PB1 (2) 2271 2006 H5N1
    ISDN133331 A/Indonesia/286H/2006 PB1 (2) 2439 2006 H5N1
    CY014336 A/Indonesia/CDC326/2006 PB1 (2) 2274 2006 H5N1
    ISDN183265 A/Indonesia/CDC326/2006 PB1 (2) 2274 2006 H5N1
    ISDN183268 A/Indonesia/CDC326N/2006 PB1 (2) 2274 2006 H5N1
    CY014339 A/Indonesia/CDC326N/2006 PB1 (2) 2274 2006 H5N1
    ISDN183272 A/Indonesia/CDC326N2/2006 PB1 (2) 2274 2006 H5N1
    CY014343 A/Indonesia/CDC326N2/2006 PB1 (2) 2274 2006 H5N1
    ISDN183274 A/Indonesia/CDC326T/2006 PB1 (2) 2274 2006 H5N1
    CY014345 A/Indonesia/CDC326T/2006 PB1 (2) 2274 2006 H5N1
    AY340084 A/avian/Netherlands/033/03 PB1 (2) 2341 2003 H7N7
    AY340083 A/avian/Netherlands/219/03 PB1 (2) 2341 2003 H7N7
    AJ620348 A/chicken/Germany/R28/03 PB1 (2) 2350 2003 H7N7
    AY340085 A/chicken/Netherlands/1/03 PB1 (2) 2341 2003 H7N7
    DQ321309 A/duck/Shantou/4610/2003 PB1 (2) 2271 2003 H5N1
    DQ997449 A/duck/Jiangsu/nf/2002 PB1 (2) 2340 2002 H9N2
    CY015019 A/chicken/Italy/1285/2000 PB1 (2) 2341 2000 H7N1
    DQ991310 A/ostrich/Italy/2332/00 PB1 (2) 2277 2000 H7N1
    DQ991302 A/ostrich/Italy/2332/00 (MA) PB1 (2) 2277 2000 H7N1
    DQ991334 A/ostrich/Italy/984/00 PB1 (2) 2277 2000 H7N1
    DQ991341 A/ostrich/Italy/984/00 (MA) PB1 (2) 2277 2000 H7N1
    DQ991318 A/chicken/Italy/5093/99 PB1 (2) 2277 1999 H7N1
    DQ991326 A/chicken/Italy/5093/99-MA PB1 (2) 2277 1999 H7N1
    CY005857 A/shoveler/Netherlands/19/1999 PB1 (2) 2341 1999 H11N9
    CY005794 A/turkey/Italy/4169/1999 PB1 (2) 2341 1999 H7N1
    AB243418 A/duck/Mongolia/736/02-duck/Hokkaido/49/98 PB1 (2) 2309 1998 1
    DQ997100 A/chicken/Hubei/wh/1997 PB1 (2) 2339 1997 H5N1
    CY005477 A/duck/Nanchang/1941/1993 PB1 (2) 2341 1993 H4N4
    CY005499 A/duck/Nanchang/1904/1992 PB1 (2) 2341 1992 H7N4
    CY005782 A/duck/Potsdam/1402-6/1986 PB1 (2) 2341 1986 H5N2
    CY005401 A/mallard duck/AST/266/1982 PB1 (2) 2341 1982 H14N5


  • AY444750 A/E/3/Emu HA (4) 1774 H5
    ISDN140057 A/Azerbaijan/001-161/2006 HA (4) 1661 2006 H5N1
    ISDN140058 A/Azerbaijan/002-115/2006 HA (4) 1686 2006 H5N1
    ISDN140054 A/Azerbaijan/006-207/2006 HA (4) 1680 2006 H5N1
    ISDN140055 A/Azerbaijan/008-208/2006 HA (4) 1684 2006 H5N1
    ISDN140056 A/Azerbaijan/011-162/2006 HA (4) 1659 2006 H5N1
    DQ992772 A/chicken/Guiyang/1218/2006 HA (4) 1668 2006 H5N1
    DQ992763 A/chicken/Guiyang/29/2006 HA (4) 1674 2006 H5N1
    DQ992766 A/chicken/Guiyang/441/2006 HA (4) 1668 2006 H5N1
    DQ992769 A/chicken/Guiyang/846/2006 HA (4) 1698 2006 H5N1
    DQ914814 A/chicken/Shanxi/2/2006 HA (4) 1779 2006 H5N1
    DQ435200 A/domestic cat/Iraq/820/2006 HA (4) 1647 2006 H5N1
    DQ435201 A/domestic goose/Iraq/812/2006 HA (4) 1647 2006 H5N1
    DQ993022 A/duck/Guangxi/2143/2006 HA (4) 1695 2006 H5N1
    DQ992773 A/duck/Guiyang/1260/2006 HA (4) 1665 2006 H5N1
    DQ992771 A/goose/Guiyang/1175/2006 HA (4) 1668 2006 H5N1
    DQ992765 A/goose/Guiyang/337/2006 HA (4) 1668 2006 H5N1
    ISDN187437 A/Indonesia/569H/2006 HA (4) 1647 2006 H5N1
    CY014401 A/Indonesia/CDC623/2006 HA (4) 1659 2006 H5N1
    ISDN183706 A/Indonesia/CDC623/2006 HA (4) 1659 2006 H5N1
    CY014409 A/Indonesia/CDC623E/2006 HA (4) 1659 2006 H5N1
    ISDN183714 A/Indonesia/CDC623E/2006 HA (4) 1659 2006 H5N1
    CY014417 A/Indonesia/CDC624/2006 HA (4) 1659 2006 H5N1
    ISDN183722 A/Indonesia/CDC624/2006 HA (4) 1659 2006 H5N1
    CY014425 A/Indonesia/CDC624E/2006 HA (4) 1659 2006 H5N1
    ISDN183730 A/Indonesia/CDC624E/2006 HA (4) 1659 2006 H5N1
    DQ320876 A/chicken/Fujian/1042/2005 HA (4) 1698 2005 H5N1
    DQ343150 A/chicken/Hebei/326/2005 HA (4) 1707 2005 H5N1
    ISDN124038 A/Chicken/Viet Nam/NCVD09/2005 HA (4) 1707 2005 H5N1
    AM183673 A/chicken/Vietnam/P78/05 HA (4) 1776 2005 H5
    DQ320875 A/duck/Fujian/897/2005 HA (4) 1695 2005 H5N1
    DQ992714 A/duck/Guangxi/2775/2005 HA (4) 1695 2005 H5N1
    DQ320901 A/duck/Guangzhou/20/2005 HA (4) 1698 2005 H5N1
    DQ992753 A/duck/Guiyang/2231/2005 HA (4) 1644 2005 H5N1
    CY017067 A/duck/Viet Nam/18/2005 HA (4) 1731 2005 H5N1
    AM183676 A/duck/Vietnam/AG40-O2/05 HA (4) 1479 2005 H5
    DQ992801 A/duck/Yunnan/5133/2005 HA (4) 1698 2005 H5N1
    DQ992802 A/duck/Yunnan/5236/2005 HA (4) 1620 2005 H5N1
    DQ095628 A/Goose/Shantou/1621/05 HA (4) 1701 2005 H5N1
    DQ320915 A/goose/Shantou/2216/2005 HA (4) 1698 2005 H5N1
    DQ366314 A/goose/Vietnam/3/05 HA (4) 1779 2005 H5N1
    DQ992794 A/goose/Yunnan/3315/2005 HA (4) 1689 2005 H5N1
    DQ992805 A/goose/Yunnan/5539/2005 HA (4) 1650 2005 H5N1
    ISDN130912 A/Indonesia/195H/2005 HA (4) 1700 2005 H5N1
    DQ387854 A/mallard/Bavaria/1/2005 HA (4) 1695 2005 H5N2
    DQ838508 A/mallard/Italy/3401/2005 HA (4) 1609 2005 H5N1
    DQ320916 A/migratory duck/Jiangxi/1653/2005 HA (4) 1698 2005 H5N1
    DQ320917 A/migratory duck/Jiangxi/1657/2005 HA (4) 1698 2005 H5N1
    DQ320918 A/migratory duck/Jiangxi/1701/2005 HA (4) 1698 2005 H5N1
    EF042623 A/teal/Egypt/9885-NAMRU3/2005 HA (4) 1197 2005 H5
    DQ838509 A/teal/Italy/3812/2005 HA (4) 1634 2005 H5N3
    DQ851561 A/teal/Italy/3931/2005 HA (4) 1683 2005 H5N2
    DQ188905 A/babbler/Fujian/320/04 HA (4) 1071 2004 H5N1
    DQ188906 A/black bulbul/Fujian/439/04 HA (4) 1071 2004 H5N1
    AY741213 A/blackbird/Hunan/1/2004 HA (4) 1707 2004 H5N1
    DQ320893 A/chicken/Guangxi/2439/2004 HA (4) 1693 2004 H5N1
    DQ080022 A/chicken/Henan/01/2004 HA (4) 1748 2004 H5N1
    AY950230 A/chicken/Henan/1/2004 HA (4) 1779 2004 H5N1
    AY950232 A/chicken/Henan/12/2004 HA (4) 1779 2004 H5N1
    AY950233 A/chicken/Henan/13/2004 HA (4) 1779 2004 H5N1
    AY950234 A/chicken/Henan/16/2004 HA (4) 1779 2004 H5N1
    AY950231 A/chicken/Henan/210/2004 HA (4) 1779 2004 H5N1
    DQ997219 A/chicken/Henan/wu/2004 HA (4) 1779 2004 H5N1
    ISDN48972 A/Chicken/Hu bei/14/2004 HA (4) 1779 2004 H5N1
    AY684706 A/chicken/Hubei/327/2004 HA (4) 1779 2004 H5N1
    AY770079 A/chicken/Hubei/489/2004 HA (4) 1779 2004 H5N1
    DQ997396 A/chicken/Hunan/fg/2004 HA (4) 1351 2004 H5N1
    AY653200 A/chicken/Jilin/9/2004 HA (4) 1779 2004 H5N1
    DQ997325 A/chicken/Jilin/hk/2004 HA (4) 1779 2004 H5N1
    DQ997332 A/chicken/Jilin/hl/2004 HA (4) 1122 2004 H5N1
    AY830774 A/chicken/Macheng/2004 HA (4) 1707 2004 H5N1
    AY623430 A/chicken/Yichang/lung-1/04 HA (4) 1517 2004 H5N1
    AY651322 A/Dk/Indonesia/MS/2004 HA (4) 1697 2004 H5N1
    DQ320883 A/duck/Guangxi/1311/2004 HA (4) 1689 2004 H5N1
    DQ320884 A/duck/Guangxi/1378/2004 HA (4) 1698 2004 H5N1
    DQ320885 A/duck/Guangxi/1586/2004 HA (4) 1698 2004 H5N1
    DQ320886 A/duck/Guangxi/1681/2004 HA (4) 1698 2004 H5N1
    DQ320887 A/duck/Guangxi/1793/2004 HA (4) 1698 2004 H5N1
    DQ320890 A/duck/Guangxi/2291/2004 HA (4) 1698 2004 H5N1
    DQ320892 A/duck/Guangxi/2396/2004 HA (4) 1698 2004 H5N1
    DQ320879 A/duck/Guangxi/668/2004 HA (4) 1665 2004 H5N1
    AY854190 A/duck/Shandong/093/2004 HA (4) 1779 2004 H5N1
    AY639405 A/goose/China/F3/2004 HA (4) 1707 2004 H5N1
    DQ320881 A/goose/Guangxi/1097/2004 HA (4) 1698 2004 H5N1
    DQ320882 A/goose/Guangxi/1198/2004 HA (4) 1689 2004 H5N1
    DQ320888 A/goose/Guangxi/1832/2004 HA (4) 1671 2004 H5N1
    DQ320889 A/goose/Guangxi/2112/2004 HA (4) 1698 2004 H5N1
    DQ320891 A/goose/Guangxi/2383/2004 HA (4) 1698 2004 H5N1
    DQ320880 A/goose/Guangxi/914/2004 HA (4) 1695 2004 H5N1
    DQ836043 A/goose/Huadong/220/2004 HA (4) 1779 2004 H5N1
    DQ997218 A/mallard/Guangxi/wt/2004 HA (4) 1779 2004 H5N1
    AY651362 A/peregrine falcon/Hong Kong/D0028/2004 HA (4) 1675 2004 H5N1
    DQ188908 A/slaty-backed gull/Shandong/59/04 HA (4) 1071 2004 H5N1
    AY950236 A/swan/Guangxi/307/2004 HA (4) 1779 2004 H5N1
    DQ997392 A/swine/Anhui/ca/2004 HA (4) 1779 2004 H5N1
    DQ997076 A/swine/Anhui/cb/2004 HA (4) 1683 2004 H5N1
    DQ997262 A/swine/Guangxi/wz/2004 HA (4) 1779 2004 H5N1
    DQ997253 A/swine/Henan/wy/2004 HA (4) 1779 2004 H5N1
    AY741215 A/tree sparrow/Henan/1/2004 HA (4) 1707 2004 H5N1
    AY741217 A/tree sparrow/Henan/2/2004 HA (4) 1707 2004 H5N1
    AY741219 A/tree sparrow/Henan/3/2004 HA (4) 1707 2004 H5N1
    AY741221 A/tree sparrow/Henan/4/2004 HA (4) 1707 2004 H5N1
    AY950235 A/wild duck/Guangdong/314/2004 HA (4) 1779 2004 H5N1
    DQ007623 A/Anas platyrhynchos/Chany Lake/9/03 HA (4) 1326 2003 H5N3
    AY651373 A/black headed gull/Hong Kong/12.1/2003 HA (4) 1696 2003 H5N1
    DQ997156 A/chicken/Hubei/wo/2003 HA (4) 1778 2003 H5N1
    DQ997268 A/chicken/Jilin/ha/2003 HA (4) 1779 2003 H5N1
    DQ997318 A/chicken/Jilin/hj/2003 HA (4) 1777 2003 H5N1
    DQ997341 A/chicken/Jilin/hm/2003 HA (4) 1304 2003 H5N1
    DQ997352 A/chicken/Jilin/hn/2003 HA (4) 1538 2003 H5N1
    DQ997355 A/chicken/Jilin/ho/2003 HA (4) 1779 2003 H5N1
    DQ997361 A/chicken/Jilin/hp/2003 HA (4) 1677 2003 H5N1
    DQ997370 A/chicken/Jilin/hq/2003 HA (4) 1590 2003 H5N1
    DQ997547 A/chicken/Jilin/xw/2003 HA (4) 1779 2003 H5N1
    DQ211925 A/chicken/luohuo/3/03 HA (4) 1707 2003 H5N1
    ISDN40326 A/Chicken/Viet Nam/Ncvd8/2003 HA (4) 1741 2003 H5N1
    AY651355 A/Ck/Hong Kong/WF157/2003 HA (4) 1692 2003 H5N1
    AY651323 A/Ck/Indonesia/2A/2003 HA (4) 1689 2003 H5N1
    AY651367 A/Dk/ST/4003/2003 HA (4) 1697 2003 H5N1
    DQ320914 A/duck/Shantou/4610/2003 HA (4) 1689 2003 H5N1
    AB212280 A/duck/Yokohama/aq10/2003 HA (4) 1707 2003 H5N1
    DQ997405 A/goose/Fujian/bb/2003 HA (4) 1779 2003 H5N1
    DQ997276 A/goose/Jilin/hb/2003 HA (4) 1779 2003 H5N1
    AY531029 A/Mallard/64650/03 HA (4) 1695 2003 H5N7
    AY747609 A/swine/Fujian/1/2003 HA (4) 1766 2003 H5N1
    DQ343152 A/chicken/Hebei/108/02 HA (4) 1707 2002 H5N1
    AY575875 A/chicken/Hong Kong/31.4/02 HA (4) 1710 2002 H5N1
    AY575879 A/chicken/Hong Kong/409.1/02 HA (4) 1692 2002 H5N1
    AY575876 A/chicken/Hong Kong/61.9/02 HA (4) 1707 2002 H5N1
    AY575878 A/chicken/Hong Kong/96.1/02 HA (4) 1712 2002 H5N1
    AY575877 A/chicken/Hong Kong/YU777/02 HA (4) 1659 2002 H5N1
    DQ320927 A/chicken/Hong Kongi/86.3/2002 HA (4) 1698 2002 H5N1
    DQ997182 A/chicken/Jiangsu/cz1/2002 HA (4) 1779 2002 H5N1
    DQ997283 A/chicken/Jilin/hd/2002 HA (4) 1779 2002 H5N1
    DQ997291 A/chicken/Jilin/he/2002 HA (4) 1775 2002 H5N1
    DQ997377 A/chicken/Jilin/hf/2002 HA (4) 1779 2002 H5N1
    DQ997299 A/chicken/Jilin/hg/2002 HA (4) 1779 2002 H5N1
    DQ997308 A/chicken/Jilin/hh/2002 HA (4) 1779 2002 H5N1
    DQ997538 A/chicken/Jilin/xv/2002 HA (4) 1779 2002 H5N1
    DQ211924 A/chicken/zhoukou/2/02 HA (4) 1707 2002 H5N1
    AY651346 A/Ck/Hong Kong/31.2/2002 HA (4) 1701 2002 H5N1
    AY651350 A/Ck/Hong Kong/3176.3/2002 HA (4) 1677 2002 H5N1
    AY651347 A/Ck/Hong Kong/37.4/2002 HA (4) 1701 2002 H5N1
    AY651349 A/Ck/Hong Kong/YU22/2002 HA (4) 1679 2002 H5N1
    AJ632268 A/duck/France/02166/2002 HA (4) 1696 2002 H5N3
    AY585357 A/duck/Fujian/01/2002 HA (4) 1707 2002 H5N1
    AY585358 A/duck/Fujian/13/2002 HA (4) 1707 2002 H5N1
    AY585362 A/duck/Guangdong/22/2002 HA (4) 1708 2002 H5N1
    AY585366 A/duck/Guangxi/53/2002 HA (4) 1708 2002 H5N1
    DQ997094 A/duck/Hubei/wg/2002 HA (4) 1779 2002 H5N1
    AY585368 A/duck/Shanghai/35/2002 HA (4) 1707 2002 H5N1
    AY585369 A/duck/Shanghai/37/2002 HA (4) 1708 2002 H5N1
    DQ997531 A/duck/Shanghai/xj/2002 HA (4) 1779 2002 H5N1
    ISDN38689 A/Duck/Viet Nam/Ncvd1/2002 HA (4) 1741 2002 H5N1
    DQ997410 A/duck/Zhejiang/bj/2002 HA (4) 1779 2002 H5N1
    AY651345 A/Gf/Hong Kong/38/2002 HA (4) 1667 2002 H5N1
    AY995883 A/mallard/Sweden/2/02 HA (4) 1710 2002 H5N2
    AY995885 A/mallard/Sweden/21/02 HA (4) 1710 2002 H5N2
    AY995884 A/mallard/Sweden/7/02 HA (4) 1710 2002 H5N2
    AY575880 A/pheasant/Hong Kong/675.14/02 HA (4) 1653 2002 H5N1
    AY651348 A/SCk/Hong Kong/YU100/2002 HA (4) 1701 2002 H5N1
    AY651352 A/teal/China/2978.1/2002 HA (4) 1636 2002 H5N1
    DQ343151 A/chicken/Hebei/718/2001 HA (4) 1707 2001 H5N1
    AY075027 A/Chicken/Hong Kong/317.5/2001 HA (4) 1748 2001 H5N1
    AF509026 A/Chicken/Hong Kong/822.1/01 HA (4) 1375 2001 H5N1
    AF509028 A/Chicken/Hong Kong/830.2/01 HA (4) 1529 2001 H5N1
    AF509029 A/Chicken/Hong Kong/858.3/01 HA (4) 1554 2001 H5N1
    AF509030 A/Chicken/Hong Kong/867.1/01 HA (4) 1406 2001 H5N1
    AF509033 A/Chicken/Hong Kong/876.1/01 HA (4) 1537 2001 H5N1
    AF509031 A/Chicken/Hong Kong/879.1/01 HA (4) 1668 2001 H5N1
    AF509034 A/Chicken/Hong Kong/891.1/01 HA (4) 1659 2001 H5N1
    AF509035 A/Chicken/Hong Kong/893.2/01 HA (4) 1497 2001 H5N1
    AF509024 A/Chicken/Hong Kong/SF219/01 HA (4) 1654 2001 H5N1
    AF509017 A/Chicken/Hong Kong/YU562/01 HA (4) 1656 2001 H5N1
    AY221529 A/Chicken/Hong Kong/YU562/01 HA (4) 1705 2001 H5N1
    AF509018 A/Chicken/Hong Kong/YU563/01 HA (4) 1656 2001 H5N1
    AY221528 A/Chicken/Hong Kong/YU822.2/01 HA (4) 1705 2001 H5N1
    AY221527 A/Chicken/Hong Kong/YU822.2/01-MB HA (4) 1705 2001 H5N1
    DQ003215 A/chicken/Jiande/1218/2001 HA (4) 1677 2001 H5N1
    AF468837 A/Duck/Anyang/AVL-1/2001 HA (4) 1748 2001 H5N1
    AY585372 A/duck/Fujian/17/2001 HA (4) 1708 2001 H5N1
    AY585360 A/duck/Guangdong/01/2001 HA (4) 1708 2001 H5N1
    AY585364 A/duck/Guangxi/22/2001 HA (4) 1708 2001 H5N1
    AY585375 A/duck/Guangxi/50/2001 HA (4) 1708 2001 H5N1
    DQ997513 A/duck/Guangxi/xa/2001 HA (4) 1779 2001 H5N1
    AY075033 A/Duck/Hong Kong/380.5/2001 HA (4) 1748 2001 H5N1
    AF509038 A/Duck/Hong Kong/573.4/01 HA (4) 1500 2001 H5N1
    AF509039 A/Duck/Hong Kong/646.3/01 HA (4) 1440 2001 H5N1
    AY585367 A/duck/Shanghai/13/2001 HA (4) 1708 2001 H5N1
    AY585376 A/duck/Shanghai/38/2001 HA (4) 1708 2001 H5N1
    DQ997522 A/goose/Guangdong/xb/2001 HA (4) 1779 2001 H5N1
    AF509036 A/Goose/Hong Kong/76.1/01 HA (4) 1674 2001 H5N1
    AF509037 A/Goose/Hong Kong/ww100/01 HA (4) 1650 2001 H5N1
    ISDN38260 A/Goose/Viet Nam/113/2001 HA (4) 1637 2001 H5N1
    ISDN38261 A/Goose/Viet Nam/324/2001 HA (4) 1637 2001 H5N1
    AF509023 A/Pigeon/Hong Kong/SF215/01 HA (4) 1674 2001 H5N1
    AF509022 A/Quail/Hong Kong/SF203/01 HA (4) 1635 2001 H5N1
    AF509021 A/Silky Chicken/Hong Kong/SF189/01 HA (4) 1674 2001 H5N1
    AY747617 A/swine/Fujian/F1/2001 HA (4) 1779 2001 H5N1
    AY296070 A/avian/NY/31588-3/00 HA (4) 1732 2000 H5N2
    AY296073 A/chukkar/NY/51375/00 HA (4) 1735 2000 H5N2
    AY585373 A/duck/Guangdong/07/2000 HA (4) 1708 2000 H5N1
    AY585374 A/duck/Guangdong/40/2000 HA (4) 1708 2000 H5N1
    AY059481 A/Duck/Hong Kong/2986.1/2000 HA (4) 1704 2000 H5N1
    AY059476 A/Duck/Hong Kong/ww381/2000 HA (4) 1704 2000 H5N1
    AY059477 A/Duck/Hong Kong/ww382/2000 HA (4) 1704 2000 H5N1
    AY059478 A/Duck/Hong Kong/ww461/2000 HA (4) 1704 2000 H5N1
    AY059479 A/Duck/Hong Kong/ww487/2000 HA (4) 1704 2000 H5N1
    AY296071 A/duck/NY/44018-1/00 HA (4) 1732 2000 H5N2
    AY296072 A/duck/NY/44018-2/00 HA (4) 1735 2000 H5N2
    AF501235 A/duck/Shanghai/1/2000 HA (4) 1729 2000 H5
    AF501234 A/duck/Shanghai/1/2000 HA (4) 1729 2000 H5
    AY585377 A/duck/Zhejiang/52/2000 HA (4) 1708 2000 H5N1
    AY075030 A/Goose/Hong Kong/3014.5/2000 HA (4) 1748 2000 H5N1
    AY059482 A/Goose/Hong Kong/3014.8/2000 HA (4) 1704 2000 H5N1
    AF398417 A/Goose/Hong Kong/385.3/2000 HA (4) 1704 2000 H5N1
    AF398418 A/Goose/Hong Kong/385.5/2000 HA (4) 1704 2000 H5N1
    AY059474 A/Goose/Hong Kong/ww26/2000 HA (4) 1704 2000 H5N1
    AY059475 A/Goose/Hong Kong/ww28/2000 HA (4) 1704 2000 H5N1
    AY059480 A/Goose/Hong Kong/ww491/2000 HA (4) 1704 2000 H5N1
    DQ201829 A/Goose/Huadong/1/2000 HA (4) 1779 2000 H5N1
    AY585363 A/duck/Guangxi/07/1999 HA (4) 1708 1999 H5N1
    AF216737 A/Environment/Hong Kong/437-10/99 HA (4) 1741 1999 H5N1
    AF216713 A/Environment/Hong Kong/437-4/99 HA (4) 1741 1999 H5N1
    AF216721 A/Environment/Hong Kong/437-6/99 HA (4) 1741 1999 H5N1
    AF216729 A/Environment/Hong Kong/437-8/99 HA (4) 1746 1999 H5N1
    AY684894 A/mallard/Netherlands/3/99 HA (4) 1767 1999 H5N2
    AF102676 A/Hong Kong/97/98 HA (4) 1656 1998 H5N1
    DQ092869 A/Pekin duck/Singapore/F59/04/98 HA (4) 1733 1998 H5N2
    AF046080 A/Chicken/Hong Kong/220/97 HA (4) 1741 1997 H5N1
    AF057291 A/chicken/Hong Kong/258/97 HA (4) 1718 1997 H5N1
    AF082034 A/Chicken/Hong Kong/728/97 HA (4) 1726 1997 H5N1
    AF046099 A/Chicken/Hong Kong/728/97 HA (4) 1741 1997 H5N1
    AF082035 A/Chicken/Hong Kong/786/97 HA (4) 1726 1997 H5N1
    AF046100 A/Chicken/Hong Kong/915/97 HA (4) 1741 1997 H5N1
    AF098541 A/Chicken/Hong Kong/y385/97 HA (4) 1726 1997 H5N1
    AF098542 A/Chicken/Hong Kong/y388/97 HA (4) 1726 1997 H5N1
    DQ997122 A/chicken/Hubei/wj/1997 HA (4) 1779 1997 H5N1
    DQ997123 A/chicken/Hubei/wk/1997 HA (4) 1159 1997 H5N1
    AF194992 A/Chicken/Italy/9097/97 HA (4) 1679 1997 H5N9
    AF098543 A/Duck/Hong Kong/p46/97 HA (4) 1726 1997 H5N1
    ISDN49024 A/duck/Singapore/3/97 HA (4) 1761 1997 H5N3
    AF303057 A/duck/Singapore/Q-F119-3/97 HA (4) 1761 1997 H5N3
    AF364334 A/Goose/Guangdong/3/97 HA (4) 1762 1997 H5N1
    AF098545 A/Goose/Hong Kong/w355/97 HA (4) 1726 1997 H5N1
    AF046088 A/Hong Kong/156/97 HA (4) 1741 1997 H5N1
    AF036356 A/Hong Kong/156/97 HA (4) 1690 1997 H5N1
    AF046096 A/Hong Kong/481/97 HA (4) 1741 1997 H5N1
    AF084279 A/Hong Kong/481/97 HA (4) 1665 1997 H5N1
    AF046098 A/Hong Kong/482/97 HA (4) 1741 1997 H5N1
    AF084280 A/Hong Kong/483/97 HA (4) 1665 1997 H5N1
    AF046097 A/Hong Kong/483/97 HA (4) 1741 1997 H5N1
    AF084532 A/Hong Kong/485/97 HA (4) 1665 1997 H5N1
    AF102681 A/Hong Kong/485/97 HA (4) 1656 1997 H5N1
    AF102671 A/Hong Kong/486/97 HA (4) 1656 1997 H5N1
    AF084281 A/Hong Kong/486/97 HA (4) 1665 1997 H5N1
    AF102672 A/Hong Kong/488/97 HA (4) 1656 1997 H5N1
    AF102677 A/Hong Kong/491/97 HA (4) 1656 1997 H5N1
    AF102682 A/Hong Kong/514/97 HA (4) 1656 1997 H5N1
    AF102673 A/Hong Kong/516/97 HA (4) 1656 1997 H5N1
    AF102680 A/Hong Kong/532/97 HA (4) 1656 1997 H5N1
    AF102674 A/Hong Kong/538/97 HA (4) 1656 1997 H5N1
    AF102678 A/Hong Kong/542/97 HA (4) 1656 1997 H5N1
    AF098546 A/Silky Chicken/Hong Kong/p17/97 HA (4) 1726 1997 H5N1
    AF144305 A/Goose/Guangdong/1/96 HA (4) 1760 1996 H5N1
    AF148678 A/goose/Guangdong/1/96 HA (4) 1707 1996 H5N1
    AB241616 A/swan/Hokkaido/4/96 HA (4) 1599 1996 H5N3
    AB241617 A/swan/Hokkaido/51/96 HA (4) 1633 1996 H5N3
    AB241618 A/swan/Hokkaido/67/96 HA (4) 1606 1996 H5N3
    S68489 A/turkey/England/50-92/91 and A/Chicken/Scotland/59 HA (4) 1773 1991 H5N1
    CY014642 A/duck/Potsdam/1402-6/1986 HA (4) 1767 1986 H5N2
    AF082042 A/Duck/Potsdam/1402-6/86 HA (4) 1700 1986 H5N2
    CY014640 A/duck/New Zealand/41/1984 HA (4) 1766 1984 H5N2
    M18450 A/Duck/Ireland/113/83 HA (4) 1773 1983 H5N8
    CY015089 A/turkey/Ireland/1378/1983 HA (4) 1773 1983 H5N8
    M18451 A/Turkey/Ireland/1378/83 HA (4) 1773 1983 H5N8
    AF082039 A/Duck/Hong Kong/698/79 HA (4) 1680 1979 H5N3
    CY014615 A/duck/Hong Kong/205/1977 HA (4) 1767 1977 H5N3
    AF082038 A/Duck/Hong Kong/205/77 HA (4) 1678 1977 H5N3


  • ISDN140057 A/Azerbaijan/001-161/2006 HA (4) 1661 2006 H5N1
    ISDN140058 A/Azerbaijan/002-115/2006 HA (4) 1686 2006 H5N1
    ISDN140054 A/Azerbaijan/006-207/2006 HA (4) 1680 2006 H5N1
    ISDN140055 A/Azerbaijan/008-208/2006 HA (4) 1684 2006 H5N1
    ISDN140056 A/Azerbaijan/011-162/2006 HA (4) 1659 2006 H5N1
    DQ864720 A/cat/Dagestan/87/06 HA (4) 1779 2006 H5N1
    DQ864715 A/chicken/Adygea/203/06 HA (4) 1751 2006 H5N1
    CY016787 A/chicken/Afghanistan/1207/2006 HA (4) 1734 2006 H5N1
    DQ661910 A/chicken/Afghanistan/1207/2006 HA (4) 1602 2006 H5N1
    DQ864718 A/chicken/Krasnodar/199/06 HA (4) 1720 2006 H5N1
    CY016779 A/Cygnus cygnus/Iran/754/2006 HA (4) 1739 2006 H5N1
    CY017035 A/Cygnus olor/Italy/742/2006 HA (4) 1722 2006 H5N1
    DQ861291 A/duck/Tuva/01/2006 HA (4) 1748 2006 H5N1
    DQ914808 A/grebe/Tyva/Tyv06-1/06 HA (4) 1754 2006 H5N1
    DQ852600 A/grebe/Tyva/Tyv06-2/06 HA (4) 1754 2006 H5N1
    DQ863503 A/grebe/Tyva/Tyv06-8/2006 HA (4) 1754 2006 H5N1
    DQ440535 A/swan/Iran/754/2006 HA (4) 1653 2006 H5N1
    DQ412997 A/swan/Italy/179/06 HA (4) 1247 2006 H5N1
    ISDN136919 A/swan/Italy/179/2006 HA (4) 1247 2006 H5N1
    AB263752 A/whooper swan/Mongolia/2/06 HA (4) 1745 2006 H5N1
    AJ715872 A/Hanoi/03/2004 HA (4) 1312 2004 H5N1
    AY651335 A/Viet Nam/3046/2004 HA (4) 1697 2004 H5N1
    ISDN40278 A/Viet Nam/3212/2004 HA (4) 1569 2004 H5N1
    AY573917 A/chicken/Taiwan/1209/03 HA (4) 1770 2003 H5N2
    DQ497679 A/chicken/Vietnam/20/2003 HA (4) 1695 2003 H5N1
    DQ320938 A/chicken/Vietnam/27/2003 HA (4) 1698 2003 H5N1
    DQ497681 A/chicken/Vietnam/28/2003 HA (4) 1695 2003 H5N1
    DQ497693 A/chicken/Vietnam/8/2003 HA (4) 1695 2003 H5N1
    AY995892 A/mallard/Sweden/40/02 HA (4) 1710 2002 H5N6
    AY995893 A/mallard/Sweden/49/02 HA (4) 1710 2002 H5N9


  • ISDN140057 A/Azerbaijan/001-161/2006 HA (4) 1661 2006 H5N1
    ISDN140058 A/Azerbaijan/002-115/2006 HA (4) 1686 2006 H5N1
    ISDN140054 A/Azerbaijan/006-207/2006 HA (4) 1680 2006 H5N1
    ISDN140055 A/Azerbaijan/008-208/2006 HA (4) 1684 2006 H5N1
    ISDN140056 A/Azerbaijan/011-162/2006 HA (4) 1659 2006 H5N1
    DQ864720 A/cat/Dagestan/87/06 HA (4) 1779 2006 H5N1
    DQ864715 A/chicken/Adygea/203/06 HA (4) 1751 2006 H5N1
    CY016787 A/chicken/Afghanistan/1207/2006 HA (4) 1734 2006 H5N1
    DQ661910 A/chicken/Afghanistan/1207/2006 HA (4) 1602 2006 H5N1
    CY016811 A/chicken/Cote d'Ivoire/1787-34/2006 HA (4) 1722 2006 H5N1
    DQ673901 A/chicken/Ivory Coast/1787/2006 HA (4) 1690 2006 H5N1
    DQ676834 A/chicken/Krasnodar/01/2006 HA (4) 1754 2006 H5N1
    DQ864718 A/chicken/Krasnodar/199/06 HA (4) 1720 2006 H5N1
    CY016779 A/Cygnus cygnus/Iran/754/2006 HA (4) 1739 2006 H5N1
    CY017035 A/Cygnus olor/Italy/742/2006 HA (4) 1722 2006 H5N1
    DQ861291 A/duck/Tuva/01/2006 HA (4) 1748 2006 H5N1
    DQ914808 A/grebe/Tyva/Tyv06-1/06 HA (4) 1754 2006 H5N1
    ISDN183706 A/Indonesia/CDC623/2006 HA (4) 1659 2006 H5N1
    CY014401 A/Indonesia/CDC623/2006 HA (4) 1659 2006 H5N1
    CY014409 A/Indonesia/CDC623E/2006 HA (4) 1659 2006 H5N1
    ISDN183714 A/Indonesia/CDC623E/2006 HA (4) 1659 2006 H5N1
    DQ440535 A/swan/Iran/754/2006 HA (4) 1653 2006 H5N1
    DQ412997 A/swan/Italy/179/06 HA (4) 1247 2006 H5N1
    ISDN136919 A/swan/Italy/179/2006 HA (4) 1247 2006 H5N1
    AB263752 A/whooper swan/Mongolia/2/06 HA (4) 1745 2006 H5N1


  • Commentary at

    http://www.recombinomics.com/News/12020601/H5N1_N186K_Azerbaijan.html


  • ISDN140057 A/Azerbaijan/001-161/2006 HA (4) 1661 2006 H5N1
    ISDN140056 A/Azerbaijan/011-162/2006 HA (4) 1659 2006 H5N1
    AY555150 A/Thailand/1-KAN-1/2004 HA (4) 1739 2004 H5N1

    The above looks like N186K


  • Azerbaijan buddies

    ISDN140057 A/Azerbaijan/001-161/2006 HA (4) 1661 2006 H5N1
    ISDN140058 A/Azerbaijan/002-115/2006 HA (4) 1686 2006 H5N1
    ISDN140054 A/Azerbaijan/006-207/2006 HA (4) 1680 2006 H5N1
    ISDN140055 A/Azerbaijan/008-208/2006 HA (4) 1684 2006 H5N1
    ISDN140056 A/Azerbaijan/011-162/2006 HA (4) 1659 2006 H5N1
    DQ864720 A/cat/Dagestan/87/06 HA (4) 1779 2006 H5N1
    DQ864715 A/chicken/Adygea/203/06 HA (4) 1751 2006 H5N1
    DQ676834 A/chicken/Krasnodar/01/2006 HA (4) 1754 2006 H5N1
    DQ864718 A/chicken/Krasnodar/199/06 HA (4) 1720 2006 H5N1
    CY016779 A/Cygnus cygnus/Iran/754/2006 HA (4) 1739 2006 H5N1
    CY017035 A/Cygnus olor/Italy/742/2006 HA (4) 1722 2006 H5N1
    DQ412997 A/swan/Italy/179/06 HA (4) 1247 2006 H5N1
    ISDN136919 A/swan/Italy/179/2006 HA (4) 1247 2006 H5N1
    DQ992944 A/goose/Yunnan/4703/2005 HA (4) 1059 2005 H5N1
    DQ992945 A/goose/Yunnan/4765/2005 HA (4) 1026 2005 H5N1
    DQ387854 A/mallard/Bavaria/1/2005 HA (4) 1695 2005 H5N2
    DQ838508 A/mallard/Italy/3401/2005 HA (4) 1609 2005 H5N1
    EF042623 A/teal/Egypt/9885-NAMRU3/2005 HA (4) 1197 2005 H5
    DQ838509 A/teal/Italy/3812/2005 HA (4) 1634 2005 H5N3
    DQ851561 A/teal/Italy/3931/2005 HA (4) 1683 2005 H5N2
    AY531029 A/Mallard/64650/03 HA (4) 1695 2003 H5N7
    AM087222 A/mallard/Germany/WV1349/03 HA (4) 956 2003 H5
    AY995883 A/mallard/Sweden/2/02 HA (4) 1710 2002 H5N2
    AY995891 A/mallard/Sweden/39/02 HA (4) 1710 2002 H5N3
    AY995884 A/mallard/Sweden/7/02 HA (4) 1710 2002 H5N2


  • ISDN140037 A/Azerbaijan/006-207/2006 PB1 (2) 2277 2006 H5N1
    ISDN140038 A/Azerbaijan/008-208/2006 PB1 (2) 2274 2006 H5N1
    DQ376853 A/chicken/Taiwan/PF3/02 PB1 (2) 2340 2002 H6N1
    CY000215 A/New York/91/2002 PB1 (2) 2341 2002 H3N2


  • PB1 travel logs

    ISDN140037 A/Azerbaijan/006-207/2006 PB1 (2) 2277 2006 H5N1
    ISDN140038 A/Azerbaijan/008-208/2006 PB1 (2) 2274 2006 H5N1
    DQ914811 A/chicken/Shanxi/2/2006 PB1 (2) 2341 2006 H5N1
    CY016785 A/Cygnus cygnus/Iran/754/2006 PB1 (2) 2293 2006 H5N1
    CY017041 A/Cygnus olor/Italy/742/2006 PB1 (2) 2302 2006 H5N1
    DQ533585 A/Cygnus olor/Italy/742/2006 PB1 (2) 2253 2006 H5N1
    ISDN183245 A/Feline/Indonesia/CDC1/2006 PB1 (2) 2274 2006 H5N1
    CY014316 A/feline/Indonesia/CDC1/2006 PB1 (2) 2274 2006 H5N1
    ISDN133330 A/Indonesia/283H/2006 PB1 (2) 2271 2006 H5N1
    ISDN133331 A/Indonesia/286H/2006 PB1 (2) 2439 2006 H5N1
    ISDN138754 A/Indonesia/292H/2006 PB1 (2) 2282 2006 H5N1
    ISDN136855 A/Indonesia/304H/2006 PB1 (2) 2268 2006 H5N1
    ISDN140932 A/Indonesia/542H/2006 PB1 (2) 2269 2006 H5N1
    ISDN187435 A/Indonesia/567H/2006 PB1 (2) 2269 2006 H5N1
    ISDN187451 A/Indonesia/583H/2006 PB1 (2) 2283 2006 H5N1
    ISDN187459 A/Indonesia/604H/2006 PB1 (2) 2279 2006 H5N1
    ISDN183265 A/Indonesia/CDC326/2006 PB1 (2) 2274 2006 H5N1
    CY014336 A/Indonesia/CDC326/2006 PB1 (2) 2274 2006 H5N1
    CY014339 A/Indonesia/CDC326N/2006 PB1 (2) 2274 2006 H5N1
    ISDN183268 A/Indonesia/CDC326N/2006 PB1 (2) 2274 2006 H5N1
    ISDN183272 A/Indonesia/CDC326N2/2006 PB1 (2) 2274 2006 H5N1
    CY014343 A/Indonesia/CDC326N2/2006 PB1 (2) 2274 2006 H5N1
    CY014345 A/Indonesia/CDC326T/2006 PB1 (2) 2274 2006 H5N1
    ISDN183274 A/Indonesia/CDC326T/2006 PB1 (2) 2274 2006 H5N1
    CY014349 A/Indonesia/CDC329/2006 PB1 (2) 2274 2006 H5N1
    ISDN183278 A/Indonesia/CDC329/2006 PB1 (2) 2274 2006 H5N1
    ISDN183280 A/Indonesia/CDC357/2006 PB1 (2) 2274 2006 H5N1
    CY014351 A/Indonesia/CDC357/2006 PB1 (2) 2274 2006 H5N1
    CY014309 A/Indonesia/CDC523/2006 PB1 (2) 2274 2006 H5N1
    ISDN181363 A/Indonesia/CDC523/2006 PB1 (2) 2274 2006 H5N1
    ISDN183303 A/Indonesia/CDC523E/2006 PB1 (2) 2274 2006 H5N1
    CY014374 A/Indonesia/CDC523E/2006 PB1 (2) 2274 2006 H5N1
    ISDN183311 A/Indonesia/CDC523T/2006 PB1 (2) 2274 2006 H5N1
    CY014382 A/Indonesia/CDC523T/2006 PB1 (2) 2274 2006 H5N1
    ISDN183700 A/Indonesia/CDC610/2006 PB1 (2) 2274 2006 H5N1
    CY014395 A/Indonesia/CDC610/2006 PB1 (2) 2274 2006 H5N1
    ISDN183748 A/Indonesia/CDC634/2006 PB1 (2) 2274 2006 H5N1
    CY014443 A/Indonesia/CDC634/2006 PB1 (2) 2274 2006 H5N1
    CY014451 A/Indonesia/CDC634P/2006 PB1 (2) 2274 2006 H5N1
    ISDN183756 A/Indonesia/CDC634P/2006 PB1 (2) 2274 2006 H5N1
    CY014459 A/Indonesia/CDC634T/2006 PB1 (2) 2274 2006 H5N1
    ISDN183764 A/Indonesia/CDC634T/2006 PB1 (2) 2274 2006 H5N1
    ISDN207106 A/Indonesia/CDC644/2006 PB1 (2) 2274 2006 H5N1
    CY014513 A/Indonesia/CDC644/2006 PB1 (2) 2274 2006 H5N1
    CY014505 A/Indonesia/CDC644T/2006 PB1 (2) 2274 2006 H5N1
    ISDN207098 A/Indonesia/CDC644T/2006 PB1 (2) 2274 2006 H5N1
    ISDN204135 A/Indonesia/CDC669/2006 PB1 (2) 2274 2006 H5N1
    CY014483 A/Indonesia/CDC669/2006 PB1 (2) 2274 2006 H5N1
    ISDN204143 A/Indonesia/CDC669P/2006 PB1 (2) 2274 2006 H5N1
    CY014491 A/Indonesia/CDC669P/2006 PB1 (2) 2274 2006 H5N1
    ISDN204151 A/Indonesia/CDC699/2006 PB1 (2) 2274 2006 H5N1
    CY014499 A/Indonesia/CDC699/2006 PB1 (2) 2274 2006 H5N1
    CY014527 A/Indonesia/CDC739/2006 PB1 (2) 2274 2006 H5N1
    CY014535 A/Indonesia/CDC742/2006 PB1 (2) 2274 2006 H5N1
    DQ493368 A/chicken/Deli Serdang/BPPVI/2005 PB1 (2) 2274 2005 H5N1
    DQ321323 A/chicken/Salatiga/BBVet-I/2005 PB1 (2) 1475 2005 H5N1
    DQ321320 A/Chinese pond heron/Hong Kong/18/2005 PB1 (2) 1471 2005 H5N1
    DQ366304 A/duck/Vietnam/1/2005 PB1 (2) 2341 2005 H5N1
    DQ366320 A/duck/Vietnam/8/05 PB1 (2) 2341 2005 H5N1
    DQ366312 A/goose/Vietnam/3/05 PB1 (2) 2341 2005 H5N1
    ISDN132412 A/Indonesia/239H/2005 PB1 (2) 2271 2005 H5N1
    ISDN132420 A/Indonesia/245H/2005 PB1 (2) 2271 2005 H5N1
    ISDN128032 A/Indonesia/6/2005 PB1 (2) 2285 2005 H5N1
    CY014324 A/Indonesia/CDC287E/2005 PB1 (2) 2274 2005 H5N1
    ISDN183253 A/Indonesia/CDC287E/2005 PB1 (2) 2274 2005 H5N1
    ISDN183256 A/Indonesia/CDC287T/2005 PB1 (2) 2274 2005 H5N1
    CY014327 A/Indonesia/CDC287T/2005 PB1 (2) 2274 2005 H5N1
    ISDN183260 A/Indonesia/CDC292N/2005 PB1 (2) 2274 2005 H5N1
    CY014331 A/Indonesia/CDC292N/2005 PB1 (2) 2274 2005 H5N1
    CY014335 A/Indonesia/CDC292T/2005 PB1 (2) 2274 2005 H5N1
    ISDN183264 A/Indonesia/CDC292T/2005 PB1 (2) 2274 2005 H5N1
    DQ997434 A/swine/Shandong/nc/2005 PB1 (2) 1893 2005 H9N2
    DQ124148 A/canine/Florida/43/2004 PB1 (2) 2274 2004 H3N8
    AY653199 A/chicken/Jilin/9/2004 PB1 (2) 2341 2004 H5N1
    DQ493362 A/chicken/Kupang-1-NTT/BPPV6/2004 PB1 (2) 1475 2004 H5N1
    DQ376863 A/chicken/Taiwan/0114/04 PB1 (2) 2340 2004 H6N1
    AY651654 A/Ck/Indonesia/4/2004 PB1 (2) 1465 2004 H5N1
    DQ321318 A/grey heron/Hong Kong/728/2004 PB1 (2) 1464 2004 H5N1
    DQ321319 A/grey heron/Hong Kong/837/2004 PB1 (2) 2271 2004 H5N1
    DQ997389 A/swine/Anhui/ca/2004 PB1 (2) 2341 2004 H5N1
    DQ997260 A/swine/Guangxi/wz/2004 PB1 (2) 2340 2004 H5N1
    DQ124155 A/canine/Florida/242/2003 PB1 (2) 2274 2003 H3N8
    AY664781 A/chicken/Hong Kong/NT142/03 PB1 (2) 1219 2003 H9N2
    DQ997269 A/chicken/Jilin/ha/2003 PB1 (2) 2340 2003 H5N1
    DQ376861 A/chicken/Taiwan/1203/03 PB1 (2) 2340 2003 H6N1
    DQ226164 A/Ck/Hong Kong/NT142/2003 PB1 (2) 1467 2003 H9N2
    DQ681214 A/duck/Xuzhou/07/2003 PB1 (2) 2318 2003 H9N2
    AB212278 A/duck/Yokohama/aq10/2003 PB1 (2) 2274 2003 H5N1
    DQ124176 A/equine/California/191/2003 PB1 (2) 2341 2003 H3N8
    DQ124171 A/equine/Massachussetts/213/2003 PB1 (2) 2341 2003 H3N8
    DQ124173 A/equine/New York/452/2003 PB1 (2) 2341 2003 H3N8
    DQ124172 A/equine/Ohio/1/2003 PB1 (2) 2341 2003 H3N8
    DQ222919 A/equine/Wisconsin/1/03 PB1 (2) 2274 2003 H3N8
    DQ226163 A/Gf/Hong Kong/SSP607/2003 PB1 (2) 1467 2003 H9N2
    DQ997403 A/goose/Fujian/bb/2003 PB1 (2) 2341 2003 H5N1
    AY664788 A/guineafowl/Hong Kong/NT184/03 PB1 (2) 1217 2003 H9N2
    DQ226161 A/Hong Kong/2108/2003 PB1 (2) 2273 2003 H9N2
    DQ226162 A/Ph/Hong Kong/CSW1323/2003 PB1 (2) 1281 2003 H9N2
    AY664786 A/pigeon/Hong Kong/WF53/03 PB1 (2) 1217 2003 H9N2
    DQ997417 A/swine/Shandong/na/2003 PB1 (2) 2341 2003 H9N2
    DQ997426 A/swine/Shandong/nb/2003 PB1 (2) 2073 2003 H9N2
    DQ997503 A/chicken/Beijing/nl/2002 PB1 (2) 1900 2002 H9N2
    DQ997485 A/chicken/Hebei/nj/2002 PB1 (2) 1912 2002 H9N2
    AY576398 A/chicken/Hong Kong/31.4/02 PB1 (2) 2183 2002 H5N1
    DQ997084 A/chicken/Hubei/wf/2002 PB1 (2) 2341 2002 H5N1
    DQ997180 A/chicken/Jiangsu/cz1/2002 PB1 (2) 2341 2002 H5N1
    DQ997192 A/chicken/Jiangsu/wa/2002 PB1 (2) 2341 2002 H5N1
    DQ997288 A/chicken/Jilin/hd/2002 PB1 (2) 2341 2002 H5N1
    DQ997297 A/chicken/Jilin/he/2002 PB1 (2) 2341 2002 H5N1
    DQ997382 A/chicken/Jilin/hf/2002 PB1 (2) 2340 2002 H5N1
    DQ997495 A/chicken/Neimonggu/nk/2002 PB1 (2) 2341 2002 H9N2
    DQ376855 A/chicken/Taiwan/A37/02 PB1 (2) 2340 2002 H6N1
    AY585490 A/duck/Guangdong/22/2002 PB1 (2) 2275 2002 H5N1
    AY585496 A/duck/Guangxi/53/2002 PB1 (2) 2275 2002 H5N1
    AY585499 A/duck/Shanghai/35/2002 PB1 (2) 2275 2002 H5N1
    DQ997529 A/duck/Shanghai/xj/2002 PB1 (2) 2340 2002 H5N1
    DQ997415 A/duck/Zhejiang/bj/2002 PB1 (2) 2341 2002 H5N1
    AY855339 A/equine/Kentucky/5/02 PB1 (2) 2341 2002 H3N8
    DQ124175 A/equine/Kentucky/5/2002 PB1 (2) 2341 2002 H3N8
    DQ064523 A/chicken/Guangdong/56/01 PB1 (2) 2341 2001 H9N2
    DQ351874 A/chicken/Hebei/718/2001 PB1 (2) 2274 2001 H5N1
    DQ997475 A/chicken/Henan/ni/2001 PB1 (2) 1941 2001 H9N2
    AF509180 A/Chicken/Hong Kong/822.1/01 PB1 (2) 1485 2001 H5N1
    AF509182 A/Chicken/Hong Kong/830.2/01 PB1 (2) 1485 2001 H5N1
    AF509183 A/Chicken/Hong Kong/858.3/01 PB1 (2) 1421 2001 H5N1
    AF509184 A/Chicken/Hong Kong/866.3/01 PB1 (2) 1485 2001 H5N1
    AF509185 A/Chicken/Hong Kong/867.1/01 PB1 (2) 1485 2001 H5N1
    AF509188 A/Chicken/Hong Kong/876.1/01 PB1 (2) 1485 2001 H5N1
    AF509186 A/Chicken/Hong Kong/879.1/01 PB1 (2) 1485 2001 H5N1
    AF509189 A/Chicken/Hong Kong/891.1/01 PB1 (2) 1485 2001 H5N1
    AF509190 A/Chicken/Hong Kong/893.2/01 PB1 (2) 1485 2001 H5N1
    AF509177 A/Chicken/Hong Kong/SF219/01 PB1 (2) 1485 2001 H5N1
    AY221583 A/Chicken/Hong Kong/YU562/01 PB1 (2) 2276 2001 H5N1
    AF509170 A/Chicken/Hong Kong/YU562/01 PB1 (2) 1944 2001 H5N1
    AF509171 A/Chicken/Hong Kong/YU563/01 PB1 (2) 1944 2001 H5N1
    AY221582 A/Chicken/Hong Kong/YU822.2/01 PB1 (2) 2276 2001 H5N1
    AY221581 A/Chicken/Hong Kong/YU822.2/01-MB PB1 (2) 2276 2001 H5N1
    DQ997458 A/chicken/Jiangsu/ng/2001 PB1 (2) 1927 2001 H9N2
    DQ064540 A/chicken/Shanghai/10/01 PB1 (2) 2341 2001 H9N2
    DQ997466 A/chicken/Yunnan/nh/2001 PB1 (2) 1963 2001 H9N2
    AY585493 A/duck/Guangxi/22/2001 PB1 (2) 2275 2001 H5N1
    AY585494 A/duck/Guangxi/35/2001 PB1 (2) 2275 2001 H5N1
    DQ997518 A/duck/Guangxi/xa/2001 PB1 (2) 2341 2001 H5N1
    DQ681219 A/duck/Xuzhou/05/2001 PB1 (2) 2321 2001 H9N2
    DQ681202 A/duck/Zhejiang/03/2001 PB1 (2) 2319 2001 H9N2
    AF509192 A/Goose/Hong Kong/ww100/01 PB1 (2) 1374 2001 H5N1
    AF509176 A/Pigeon/Hong Kong/SF215/01 PB1 (2) 1485 2001 H5N1
    AF509175 A/Quail/Hong Kong/SF203/01 PB1 (2) 1320 2001 H5N1
    AF509174 A/Silky Chicken/Hong Kong/SF189/01 PB1 (2) 1485 2001 H5N1
    AF523431 A/Wild Duck/Shantou/4808/01 PB1 (2) 1512 2001 H9N2
    DQ485214 A/chicken/China/Guangxi14/2000 PB1 (2) 2321 2000 H9N2
    DQ485222 A/chicken/China/Guangxi17/2000 PB1 (2) 2321 2000 H9N2
    DQ064528 A/chicken/Heilongjiang/35/00 PB1 (2) 2341 2000 H9N2
    CY015019 A/chicken/Italy/1285/2000 PB1 (2) 2341 2000 H7N1
    AJ410508 A/chukka/Hong Kong/FY295/00 PB1 (2) 2277 2000 H6N1
    AF523443 A/Duck/Shantou/1042/00 PB1 (2) 1050 2000 H9N2
    AF523429 A/Duck/Shantou/1043/00 PB1 (2) 1500 2000 H9N2
    AF523430 A/Duck/Shantou/2134/00 PB1 (2) 1503 2000 H9N2
    AY585503 A/duck/Zhejiang/52/2000 PB1 (2) 2274 2000 H5N1
    DQ991310 A/ostrich/Italy/2332/00 PB1 (2) 2277 2000 H7N1
    DQ991302 A/ostrich/Italy/2332/00 (MA) PB1 (2) 2277 2000 H7N1
    DQ991334 A/ostrich/Italy/984/00 PB1 (2) 2277 2000 H7N1
    DQ991341 A/ostrich/Italy/984/00 (MA) PB1 (2) 2277 2000 H7N1
    AJ427306 A/pheasant/Hong Kong/FY294/00 PB1 (2) 2277 2000 H6N1
    AJ410507 A/pheasant/Hong Kong/NT261/00 PB1 (2) 2277 2000 H6N1
    AJ410505 A/quail/Hong Kong/SF550/00 PB1 (2) 2277 2000 H6N1
    AJ410506 A/quail/Hong Kong/SF595/00 PB1 (2) 2277 2000 H6N1
    DQ064525 A/chicken/Guangxi/10/99 PB1 (2) 2341 1999 H9N2
    DQ064526 A/chicken/Guangxi/9/99 PB1 (2) 2341 1999 H9N2
    AF222634 A/Chicken/Hong Kong/NT16/99 PB1 (2) 1362 1999 H9N2
    DQ991318 A/chicken/Italy/5093/99 PB1 (2) 2277 1999 H7N1
    DQ991326 A/chicken/Italy/5093/99-MA PB1 (2) 2277 1999 H7N1
    AJ291396 A/Chicken/Pakistan/2/99 PB1 (2) 2335 1999 H9N2
    AF508619 A/Chicken/Pakistan/4/99 PB1 (2) 2068 1999 H9N2
    AF508620 A/Chicken/Pakistan/5/99 PB1 (2) 1980 1999 H9N2
    AY585492 A/duck/Guangxi/07/1999 PB1 (2) 2276 1999 H5N1
    DQ681224 A/duck/Nanjing/01/1999 PB1 (2) 2317 1999 H9N2
    DQ376843 A/duck/Taiwan/WB29/99 PB1 (2) 2340 1999 H6N1
    DQ124174 A/equine/New York/1/1999 PB1 (2) 2341 1999 H3N8
    AY043029 A/Guangzhou/333/99 PB1 (2) 2302 1999 H9N2
    AB262461 A/Hokkaido/9/99 PB1 (2) 2309 1999 H9N2
    AJ404634 A/Hong Kong/1073/99 PB1 (2) 2328 1999 H9N2
    AF258816 A/Hong Kong/1073/99 PB1 (2) 2341 1999 H9N2
    AF258817 A/Hong Kong/1074/99 PB1 (2) 2341 1999 H9N2
    AJ410502 A/pheasant/Hong Kong/SH39/99 PB1 (2) 2277 1999 H6N1
    AF222636 A/Pheasant/Hong Kong/SSP11/99 PB1 (2) 1362 1999 H9N2
    AF222633 A/Pigeon/Hong Kong/FY6/99 PB1 (2) 1362 1999 H9N2
    AJ410503 A/quail/Hong Kong/1721-20/99 PB1 (2) 2277 1999 H6N1
    AJ410504 A/quail/Hong Kong/1721-30/99 PB1 (2) 2277 1999 H6N1
    AF222632 A/Quail/Hong Kong/A17/99 PB1 (2) 1362 1999 H9N2
    AF222635 A/Quail/Hong Kong/SSP10/99 PB1 (2) 1362 1999 H9N2
    CY005794 A/turkey/Italy/4169/1999 PB1 (2) 2341 1999 H7N1
    DQ997446 A/chicken/Henan/nd/1998 PB1 (2) 2245 1998 H9N2
    AY253751 A/Chicken/Shanghai/F/98 PB1 (2) 2341 1998 H9N2
    AB049156 A/parakeet/Narita/92A/98 PB1 (2) 2277 1998 H9N2
    DQ064524 A/chicken/Guangdong/6/97 PB1 (2) 2341 1997 H9N2
    AF046085 A/Chicken/Hong Kong/220/97 PB1 (2) 2280 1997 H5N1
    AF098590 A/Chicken/Hong Kong/258/97 PB1 (2) 2228 1997 H5N1
    AF098592 A/Chicken/Hong Kong/728/97 PB1 (2) 2228 1997 H5N1
    AF098593 A/Chicken/Hong Kong/786/97 PB1 (2) 2228 1997 H5N1
    AF156417 A/Chicken/Hong Kong/G23/97 PB1 (2) 2242 1997 H9N2
    AF156416 A/Chicken/Hong Kong/G9/97 PB1 (2) 2249 1997 H9N2
    AF098591 A/Chicken/Hong Kong/y388/97 PB1 (2) 2228 1997 H5N1
    AF508637 A/Chicken/Shenzhen/9/97 PB1 (2) 2277 1997 H9N2
    DQ064516 A/chicken/Shenzhen/9/97 PB1 (2) 2341 1997 H9N2
    AF508634 A/Chicken/Sichuan/5/97 PB1 (2) 2256 1997 H9N2
    AF156420 A/Duck/Hong Kong/Y439/97 PB1 (2) 2218 1997 H9N2
    AF084265 A/Hong Kong/483/97 PB1 (2) 2277 1997 H5N1
    AF258820 A/Hong Kong/483/97 PB1 (2) 2341 1997 H5N1
    AF258824 A/Hong Kong/532/97 PB1 (2) 2341 1997 H5N1
    AF258826 A/Hong Kong/542/97 PB1 (2) 2341 1997 H5N1
    AB049155 A/parakeet/Chiba/1/97 PB1 (2) 2277 1997 H9N2
    AF508625 A/Pheasant/Ireland/PV18/97 PB1 (2) 2049 1997 H9N2
    AF156418 A/Pigeon/Hong Kong/Y233/97 PB1 (2) 2227 1997 H9N2
    AF156421 A/Quail/Hong Kong/G1/97 PB1 (2) 2233 1997 H9N2
    CY015151 A/shorebird/Delaware/224/1997 PB1 (2) 2341 1997 H13N6
    AF250477 A/Teal/Hong Kong/W312/97 PB1 (2) 2277 1997 H6N1
    CY005477 A/duck/Nanchang/1941/1993 PB1 (2) 2341 1993 H4N4
    CY005499 A/duck/Nanchang/1904/1992 PB1 (2) 2341 1992 H7N4
    M25929 A/Equine/Tennessee/5/86 PB1 (2) 2341 1986 H3N8
    CY015025 A/chicken/Victoria/1985 PB1 (2) 2341 1985 H7N7
    CY015063 A/starling/Victoria/5156/1985 PB1 (2) 2341 1985 H7N7
    AF523438 A/Duck/Hong Kong/552/79 PB1 (2) 1524 1979 H9N2
    CY005651 A/duck/Hong Kong/562/1979 PB1 (2) 2341 1979 H10N9
    CY004629 A/mallard duck/Alberta/663/1979 PB1 (2) 2341 1979 H3N5
    CY004120 A/pintail duck/Alberta/628/1979 PB1 (2) 2341 1979 H6N8
    CY005552 A/duck/Hong Kong/278/1978 PB1 (2) 2341 1978 H2N9
    CY005544 A/duck/Hong Kong/319/1978 PB1 (2) 2341 1978 H2N2
    CY005581 A/duck/Hong Kong/342/1978 PB1 (2) 2341 1978 H5N2
    CY005573 A/duck/Hong Kong/365/1978 PB1 (2) 2341 1978 H4N6
    AF523437 A/Duck/Hong Kong/366/78 PB1 (2) 1527 1978 H9N2
    U48279 A/Duck/Hong Kong/412/78 PB1 (2) 1138 1978 H4N2
    CY005588 A/goose/Hong Kong/23/1978 PB1 (2) 2341 1978 H5N3
    M25928 A/Equine/London/1416/73 PB1 (2) 2341 1973 H7N7
    CY005826 A/shearwater/Australia/1/1973 PB1 (2) 2341 1973 H6N5
    CY014662 A/turkey/Ontario/6118/1968 PB1 (2) 2341 1968 H8N4
    CY015107 A/turkey/Ontario/7732/1966 PB1 (2) 2341 1966 H5N9


  • ISDN140037 A/Azerbaijan/006-207/2006 PB1 (2) 2277 2006 H5N1
    ISDN140038 A/Azerbaijan/008-208/2006 PB1 (2) 2274 2006 H5N1
    CY016785 A/Cygnus cygnus/Iran/754/2006 PB1 (2) 2293 2006 H5N1
    CY017041 A/Cygnus olor/Italy/742/2006 PB1 (2) 2302 2006 H5N1
    DQ533585 A/Cygnus olor/Italy/742/2006 PB1 (2) 2253 2006 H5N1


  • These "travel logs" simply show were new pieces of genes originate. Each post is a different portion of the gene being probed, and the lists are other isolates that share that piece of the gene being tested. The lists are simply copied from the table of matches, such was the list in the first post.

    I have color coded the sequences so the panel can be easily interpreted. The sequences are named by the species, location, sample number, year isolated, and serotype. The table includes the name of the gene, its number, the size of the sequence deposited, the year of isolation and the serotype.

    For the color coding, red bold is human, red is mammalian, bold is the Qinghai strain, purple is Fujian strain, green is northern China.


  • ISDN140057 A/Azerbaijan/001-161/2006 HA (4) 1661 2006 H5N1
    ISDN140056 A/Azerbaijan/011-162/2006 HA (4) 1659 2006 H5N1
    ISDN136841 A/Indonesia/298H/2006 HA (4) 1695 2006 H5N1
    AY737289 A/chicken/Guangdong/191/04 HA (4) 1776 2004 H5N1
    AY221524 A/Chicken/Hong Kong/FY150/01 HA (4) 1705 2001 H5N1
    AY221523 A/Chicken/Hong Kong/FY150/01-MB HA (4) 1705 2001 H5N1
    AY585367 A/duck/Shanghai/13/2001 HA (4) 1708 2001 H5N1


  • ISDN140057 A/Azerbaijan/001-161/2006 HA (4) 1661 2006 H5N1
    ISDN140058 A/Azerbaijan/002-115/2006 HA (4) 1686 2006 H5N1
    ISDN140054 A/Azerbaijan/006-207/2006 HA (4) 1680 2006 H5N1
    ISDN140055 A/Azerbaijan/008-208/2006 HA (4) 1684 2006 H5N1
    ISDN140056 A/Azerbaijan/011-162/2006 HA (4) 1659 2006 H5N1
    DQ864720 A/cat/Dagestan/87/06 HA (4) 1779 2006 H5N1
    DQ864715 A/chicken/Adygea/203/06 HA (4) 1751 2006 H5N1
    DQ661910 A/chicken/Afghanistan/1207/2006 HA (4) 1602 2006 H5N1
    CY016787 A/chicken/Afghanistan/1207/2006 HA (4) 1734 2006 H5N1
    DQ864718 A/chicken/Krasnodar/199/06 HA (4) 1720 2006 H5N1
    CY016779 A/Cygnus cygnus/Iran/754/2006 HA (4) 1739 2006 H5N1
    CY017035 A/Cygnus olor/Italy/742/2006 HA (4) 1722 2006 H5N1
    DQ914808 A/grebe/Tyva/Tyv06-1/06 HA (4) 1754 2006 H5N1
    DQ852600 A/grebe/Tyva/Tyv06-2/06 HA (4) 1754 2006 H5N1
    DQ863503 A/grebe/Tyva/Tyv06-8/2006 HA (4) 1754 2006 H5N1
    DQ412997 A/swan/Italy/179/06 HA (4) 1247 2006 H5N1
    ISDN136919 A/swan/Italy/179/2006 HA (4) 1247 2006 H5N1
    AB263752 A/whooper swan/Mongolia/2/06 HA (4) 1745 2006 H5N1
    CY017059 A/chicken/Viet Nam/17/2005 HA (4) 1731 2005 H5N1
    DQ992851 A/duck/Guangxi/3579/2005 HA (4) 1068 2005 H5N1
    DQ992852 A/duck/Guangxi/3857/2005 HA (4) 1056 2005 H5N1
    CY016883 A/duck/Viet Nam/12/2005 HA (4) 1731 2005 H5N1
    DQ320939 A/duck/Vietnam/568/2005 HA (4) 1695 2005 H5N1
    DQ992719 A/goose/Guangxi/3316/2005 HA (4) 1695 2005 H5N1
    CY017051 A/quail/Viet Nam/15/2005 HA (4) 1728 2005 H5N1
    AY737289 A/chicken/Guangdong/191/04 HA (4) 1776 2004 H5N1
    AY518362 A/duck/China/E319-2/03 HA (4) 1776 2003 H5N1
    AF098537 A/Turkey/Ramon/73 HA (4) 1027 1973 H5N2
    AY536212 A/Ty/ON/6213/66 HA (4) 771 1966 H5


  • Commentary

    N186K In H5N1 in Azerbaijan Patients

    Recombinomics Commentary
    December 2, 2006

    Recently released (http://www.flutrackers.com/forum/showthread.php?t=13535) human H5N1 sequences from Azerbaijan patients shed additional light on HA changes affecting the affinity of binding to 2,6 gal receptors, which are found in the human upper respiratory tract. Interest in such changes has been high, since an increased affinity is likely to lead to more efficient human-to-human transmission. The acquisition of one such change, S227N, was predicted because donor sequences were present in H9N2 in birds in the Middle East and Qinghai H5N1 migrated into the region in the fall of 2005.

    S227N was present in the index case for the outbreak in Turkey as well as a second case in Turkey and a case in Egypt. A recent paper (http://www.flutrackers.com/forum/showpost.php?p=46976&postcount=1) in Nature indicated S227N could synergize (http://www.recombinomics.com/News/11160601/H5N1_Human_Acquisitions.html) with another HA change, Q196R which was present patients from Iraq and or Azerbaijan. Moreover, another change that increased affinity for human receptor, N186K, was as present in these patients. However, these changes were not present in the public human sequences from these two countries and the description in the Nature paper was ambiguous. It was unclear if patients had one or both changes, and it was unclear which changes were in which patients. The only change in these positions in the public sequences was N186S in the index case for Iraq. Thus, only WHO consultants who could access the private database could confirm the statements in the Nature paper.

    The release of five human H5N1 from Iraq clarified the distribution in Iraq. All six sequences had N186S (http://www.recombinomics.com/News/03150601/H5N1_Iraq_Sequences.html) and two h (http://www.recombinomics.com/News/12010602/H5N1_N186S_Q196R_Iraq.html)ad Q196R (http://www.recombinomics.com/News/12010602/H5N1_N186S_Q196R_Iraq.html). The effect of N186S in receptor binding was not described in the Nature paper. However, this change is only in the human sequences from Iraq. It was not present in a goose or cat sequence from Iraq.

    In addition to the five human sequences from Iraq, four additional human sequences from Azerbaijan were released. Those isolates are listed below. Two of the newly released sequences, A/Azerbaijan/001-161/2006 and A/Azerbaijan/011-162/2006 have N186K.

    This newly released data are cause for concern. All of these isolates are in the Qinghai strain of H5N1, which has another mammalian polymorphism, PB2 E627K. Moreover, a recent isolate from a fatal case in Egypt has M230I (http://www.recombinomics.com/News/10220603/H5N1_M230I.html). This is the first reported Qinghai H5N1 with this change. This change is found in all three circulating human HA's, H1N1, H3N2, and influenza B (http://www.recombinomics.com/News/11150602/H5N1_RBD_B.html). Moreover, this change creates an identity between H5N1 and influenza B at positions 226-230 (QSGRI).

    These changes in Qinghai isolates in a relatively small geographic region region are cause for concern. All of the isolates have PB2 E627K. S227N has been detected in Turkey and Egypt. N186K is in Azerbaijan, which is adjacent to Turkey and Iraq, while N186S and Q196R is in Iraq. Egypt has M230I, in addition to S227N.

    Additional combinations are possible because all of these changes are in the Qinghai strain, which can lead to further recombination and acquisition of more than one change in the same host.

    E627K has become fixed in in wild birds with Qinghai H5N1. Detection of the HA changes has been largely limited to human isolates, although N186S and M230I have been found in H5N1 in birds. Detection of these changes in birds may be low because of isolation procedures. Isolation of H5N1 from avian sources involves chicken eggs, which selects against these changes. Moreover, heterogeneity has been found in human isolates grown on mammalian MDCK cells. The patient from Vietnam who had both Q196R and S227N did not have either change in two of the three reported clones. Similarly N186K was in the first sequence (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=45453828) deposited from the patient in Thailand, but was absent (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=46


  • ISDN140037 A/Azerbaijan/006-207/2006 PB1 (2) 2277 2006 H5N1
    ISDN140038 A/Azerbaijan/008-208/2006 PB1 (2) 2274 2006 H5N1
    DQ493352 A/chicken/Kulon Progo/BBVW/2005 PB1 (2) 2274 2005 H5N1
    AY651697 A/Ck/ST/4231/2003 PB1 (2) 1462 2003 H5N1


  • ISDN140057 A/Azerbaijan/001-161/2006 HA (4) 1661 2006 H5N1
    ISDN140058 A/Azerbaijan/002-115/2006 HA (4) 1686 2006 H5N1
    ISDN140054 A/Azerbaijan/006-207/2006 HA (4) 1680 2006 H5N1
    ISDN140055 A/Azerbaijan/008-208/2006 HA (4) 1684 2006 H5N1
    ISDN140056 A/Azerbaijan/011-162/2006 HA (4) 1659 2006 H5N1
    DQ992766 A/chicken/Guiyang/441/2006 HA (4) 1668 2006 H5N1
    DQ992769 A/chicken/Guiyang/846/2006 HA (4) 1698 2006 H5N1
    DQ992765 A/goose/Guiyang/337/2006 HA (4) 1668 2006 H5N1
    ISDN136841 A/Indonesia/298H/2006 HA (4) 1695 2006 H5N1
    DQ837590 A/turkey/Egypt/5613NAMRU3-T/2006 HA (4) 1603 2006 H5N1
    ISDN187390 A/Chicken/Indonesia/Wates83/2005 HA (4) 1714 2005 H5N1
    DQ992753 A/duck/Guiyang/2231/2005 HA (4) 1644 2005 H5N1
    DQ095627 A/Quail/Shantou/911/05 HA (4) 1703 2005 H5N1
    DQ997405 A/goose/Fujian/bb/2003 HA (4) 1779 2003 H5N1
    AY575875 A/chicken/Hong Kong/31.4/02 HA (4) 1710 2002 H5N1
    AY575879 A/chicken/Hong Kong/409.1/02 HA (4) 1692 2002 H5N1
    AY575878 A/chicken/Hong Kong/96.1/02 HA (4) 1712 2002 H5N1
    AY585362 A/duck/Guangdong/22/2002 HA (4) 1708 2002 H5N1
    AY075033 A/Duck/Hong Kong/380.5/2001 HA (4) 1748 2001 H5N1
    AB270593 A/gull/Shimane/91/88 HA (4) 549 1988 H7N8


  • ISDN140055 A/Azerbaijan/008-208/2006 HA (4) 1684 2006 H5N1
    DQ376645 A/chicken/Taiwan/1203/03 HA (4) 1747 2003 H6N1
    AY585371 A/duck/Zhejiang/15/2000 HA (4) 1708 2000 H5N1
    L11128 A/duck/Hong Kong/273/78 HA (4) 1772 1978 H2N2
    CY005546 A/duck/Hong Kong/278/1978 HA (4) 1772 1978 H2N9
    CY005538 A/duck/Hong Kong/319/1978 HA (4) 1771 1978 H2N2
    AF290442 A/Pintail Duck/Primorie/695/76 (recomb) HA (4) 1717 1976 H2
    AF290439 A/Pintail Duck/Primorie/695/76 (recomb) HA (4) 1717 1976 H2
    AF290441 A/Pintail Duck/Primorie/695/76 (recomb) HA (4) 1717 1976 H2
    AF290440 A/Pintail Duck/Primorie/695/76 (recomb) HA (4) 1717 1976 H2
    L11141 A/Pintail/Praimoric/625/76 HA (4) 1772 1976 H2N2


  • ISDN140037 A/Azerbaijan/006-207/2006 PB1 (2) 2277 2006 H5N1
    ISDN140038 A/Azerbaijan/008-208/2006 PB1 (2) 2274 2006 H5N1
    CY016785 A/Cygnus cygnus/Iran/754/2006 PB1 (2) 2293 2006 H5N1
    DQ533585 A/Cygnus olor/Italy/742/2006 PB1 (2) 2253 2006 H5N1
    CY017041 A/Cygnus olor/Italy/742/2006 PB1 (2) 2302 2006 H5N1
    CY016873 A/chicken/Viet Nam/10/2005 PB1 (2) 2302 2005 H5N1
    CY017065 A/chicken/Viet Nam/17/2005 PB1 (2) 2302 2005 H5N1
    DQ321295 A/duck/Guangxi/951/2005 PB1 (2) 2271 2005 H5N1
    DQ321306 A/duck/Hunan/1265/2005 PB1 (2) 2271 2005 H5N1
    DQ321307 A/duck/Hunan/1608/2005 PB1 (2) 2271 2005 H5N1
    DQ321308 A/duck/Hunan/1652/2005 PB1 (2) 2271 2005 H5N1
    CY016889 A/duck/Viet Nam/12/2005 PB1 (2) 2302 2005 H5N1
    DQ321333 A/duck/Vietnam/568/2005 PB1 (2) 1485 2005 H5N1
    DQ321291 A/goose/Guangxi/345/2005 PB1 (2) 2271 2005 H5N1
    CY017057 A/quail/Viet Nam/15/2005 PB1 (2) 2302 2005 H5N1
    DQ321290 A/chicken/Guangxi/2461/2004 PB1 (2) 1460 2004 H5N1
    DQ997382 A/chicken/Jilin/hf/2002 PB1 (2) 2340 2002 H5N1







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